Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J22
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   3.0  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    22   9.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    22   9.3  

>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 28  HRERRNPRSAVKKRSNAGVRLQC 96
           H  +R+P  A++     GVRL C
Sbjct: 314 HEHQRDPAYAIRTALTRGVRLLC 336


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 28  HRERRNPRSAVKKRSNAGVRL 90
           H  +RNPRSA+ +     V L
Sbjct: 305 HERQRNPRSAIYQACTDSVSL 325


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 11  LR*TTSTEKEGIQG--PPSRRDQTQAFGFN 94
           +R  +S  K+ I+   PP  R++ Q+FGF+
Sbjct: 502 IREFSSERKKKIEDFEPPCSREKLQSFGFD 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,343
Number of Sequences: 5004
Number of extensions: 4347
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)