Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J22
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    28   0.92 
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    28   0.92 
05_07_0021 - 27100249-27101838,27102434-27102547                       25   8.5  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 9   DYAKLLAQRKKESKVRRQEEI 71
           +Y KLLAQR KE + RR E +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 9   DYAKLLAQRKKESKVRRQEEI 71
           +Y KLLAQR KE + RR E +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232


>05_07_0021 - 27100249-27101838,27102434-27102547
          Length = 567

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 31  RERRNPRSAVKKRSNAGVRLQCVTLRA 111
           R+ R+P S+VK+R    + L C+ L A
Sbjct: 534 RKPRSPSSSVKRRKRRVLTLNCLKLLA 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,813
Number of Sequences: 37544
Number of extensions: 30628
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)