Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J22
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical
           protein F10D11.6 protein.
          Length = 846

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 3   TRDYAKLLAQRKKESKVRRQEE 68
           T +  KL  +RK++S+ RRQE+
Sbjct: 614 TNETTKLRTKRKRDSRRRRQED 635


>AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical
           protein F47G6.3 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 30  QRKKESKVRRQEEIK 74
           Q+ KESKV ++EEIK
Sbjct: 141 QKSKESKVEKKEEIK 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,709
Number of Sequences: 27780
Number of extensions: 25359
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)