Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J19
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262...    26   4.7  
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159     25   8.3  

>11_06_0120 -
           20324794-20325204,20325416-20325545,20326172-20326255,
           20326584-20326823,20327418-20327498,20327761-20328113
          Length = 432

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 113 KGLNDHCRTRTHWSCRSRFQTHH--CCRC 33
           K + D  R +T   CR +   HH  CC+C
Sbjct: 210 KRIYDQVRGQTCHQCRQKTLGHHTSCCKC 238


>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
          Length = 400

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   RRTVHQALRAATAVMSL 56
           RRT   ALR ATAV+SL
Sbjct: 272 RRTTSVALRVATAVLSL 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,496,252
Number of Sequences: 37544
Number of extensions: 49802
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)