Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J19
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   0.91 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   8.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 0.91
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 71  CRSRFQTHHCCRCPKSL 21
           CRSR  +  CC C  S+
Sbjct: 346 CRSRRHSDSCCLCLDSM 362


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 74  SCRSRFQTHHCCRCP 30
           SC S FQ    C CP
Sbjct: 418 SCSSFFQQFFHCYCP 432


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 165 FKKYVDLNYI 194
           F  YVD+NY+
Sbjct: 168 FATYVDINYV 177


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 216 LQVIFFMRYNLDQHIF 169
           +Q++F +R  L  H+F
Sbjct: 203 IQIVFNLRRRLGYHLF 218


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 113 KGLNDHCRT 87
           K +NDHC T
Sbjct: 817 KNINDHCVT 825


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,430
Number of Sequences: 438
Number of extensions: 619
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)