Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J18
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    29   0.081
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   0.76 
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    23   7.1  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    22   9.3  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    22   9.3  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 29.1 bits (62), Expect = 0.081
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 138 NRPGIFFGQCSEIC 97
           +R G+F+GQCSE+C
Sbjct: 208 DREGLFYGQCSELC 221


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 80   YKYDYSQISEH*PKKIPGRL*KNL 151
            ++YDY+    H PKK    L KN+
Sbjct: 1405 HRYDYADYEAHVPKKTMSELSKNI 1428


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 104 KFASNHIYTIVMKDFNKIY 48
           ++  NH+Y  V+  F+K+Y
Sbjct: 412 RYFKNHVYLGVVDKFHKLY 430


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 159 KSNKFFYNRPG 127
           K +K +YNRPG
Sbjct: 825 KEDKIYYNRPG 835


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 167 GRLNQTNFFIID 132
           G LN+ NFF++D
Sbjct: 334 GALNEPNFFVLD 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,285
Number of Sequences: 5004
Number of extensions: 7964
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)