Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J18
         (180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   1.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   7.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   7.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    19   7.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 161 LNQTNFFIIDLEFFL 117
           L +T  F +DLEF+L
Sbjct: 76  LRRTEAFEVDLEFYL 90


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 119 LVNVQKFASNHIYTIVMKDFNKIYNE*NYL 30
           L N   + +N+   +   ++ K+Y   NY+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 119 LVNVQKFASNHIYTIVMKDFNKIYNE*NYL 30
           L N   + +N+   +   ++ K+Y   NY+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 119 LVNVQKFASNHIYTIVMKDFNKIYNE*NYL 30
           L N   + +N+   +   ++ K+Y   NY+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,765
Number of Sequences: 438
Number of extensions: 539
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)