Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J17
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   1.8  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   2.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   3.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   3.1  
SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    23   4.1  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    23   4.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    23   5.4  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    23   5.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   7.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    22   9.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    22   9.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    22   9.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    22   9.5  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 63  SFFYLVYLAFVWINICGIM-VIKRKI 137
           + F +++LAF+WI    ++ + KRK+
Sbjct: 275 TLFVIIWLAFLWIGYSFLVDIFKRKV 300


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 173 RILTHAPYYRNSNFPLYNHYATDINPYKGQINQV 72
           RIL+  PYY+NS    Y+ + + +  YK  I  V
Sbjct: 31  RILSILPYYKNS----YSDFISVLQMYKVHIRMV 60


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 206 LIKKHNVYL*MRILTHAPYYRNSNFPLYNH-YATDINPYKGQINQ 75
           L+ K N+Y     L H P +   + P++N  Y T I   K   N+
Sbjct: 359 LLNKDNMYTAWIPLRHPPIFYIGHVPVFNDIYLTKIVKNKATANK 403


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 57  VSSFFYLVYLAFVWI 101
           ++S F+++YL +VW+
Sbjct: 318 ITSTFWIIYLLYVWL 332


>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 107 LWHNGYKEENLNFCSKEHV 163
           L  NG+++ N +F SKE V
Sbjct: 35  LLRNGFRQNNCSFYSKEKV 53


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 GYKEENLNFCSKEHVSKFS 175
           G KE +LN CSK+   KF+
Sbjct: 106 GSKEHSLNACSKKGPLKFA 124


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 122 NHYATDINPYKGQINQVKE*AY 57
           +H  TDI  Y+G  NQ K+  Y
Sbjct: 624 DHVCTDIIHYEGVKNQAKKLGY 645


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 53  CNYTNSLMPTYTKL 12
           C Y   L+PTY KL
Sbjct: 60  CGYCKKLVPTYQKL 73


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 128 LYNHYATDINPYKGQINQ 75
           L+ HY +D +PY G   Q
Sbjct: 224 LFFHYLSDCSPYTGSFVQ 241


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 176 MRILTHAPYYRNSNFPLYNHYATDINPYKGQINQVKE*AYPCNYTNSLMPTY 21
           +R L +    +++   L+     + N Y  +  QV+E  Y C   NSL+  +
Sbjct: 460 LRYLKYRNSKKDTELSLFLPAPEECNIYHNEHIQVQEDNYLCPIENSLIDLF 511


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 45   VVTRVSSFFYLVYLAFVWINICGIMVIK 128
            +V R  + F+L+ +AF+ + I  ++V K
Sbjct: 1831 IVQRYGTMFFLLLIAFLALIIIPLVVAK 1858


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 116 NGYKEENLNFCSKEHVSKFSFINIHYVSLSGA 211
           N Y  EN++ C  E      F N++  +L  A
Sbjct: 36  NDYSPENVSLCQNESDQGVIFSNLNDQTLQDA 67


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 45  VVTRVSSFFYLVYLAFVW 98
           +V+  SS  Y+V L+++W
Sbjct: 496 IVSMASSPLYIVLLSYIW 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,268
Number of Sequences: 5004
Number of extensions: 16031
Number of successful extensions: 40
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)