Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J17
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844           27   2.7  
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225...    26   4.7  
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    26   4.7  
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    25   8.2  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    25   8.2  

>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
          Length = 774

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 104 YLWHNGYKEENLNFCSKEHVSKFSFINIHYVSLSGAMR 217
           ++W+  YK+      + +HV   + +N+ Y  LSG +R
Sbjct: 375 FVWNKIYKQLRTELANNDHVR--AILNLSYHDLSGDLR 410


>08_01_1036 +
           10520727-10521117,10521301-10521479,10521603-10522593,
           10522613-10522656
          Length = 534

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -3

Query: 155 PYYRNSNFPLYNHYATDINPYKGQINQVKE*AYPCNYTNSLMPTYTKLIP 6
           P Y    FP Y    TD+ P    +  V     P   T++ +P  + + P
Sbjct: 138 PVYLQGVFPNYRSLITDVQPSIQAVPSVAPTTQPTTPTSTPLPAPSAMAP 187


>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 167 LTHAPYYRNSNFPLYNHY 114
           L H P YRN NF L+  Y
Sbjct: 305 LLHQPVYRNQNFKLWLSY 322


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 EENLNFCSKEHVSKFSFINIHYVSLSG 208
           EEN  F +K  VS     NIH++S+ G
Sbjct: 463 EENFVFMTKGFVSGIPPENIHHLSIDG 489


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 167 LTHAPYYRNSNFPLYNHYATDINPYKGQINQVKE*AYPC 51
           L H  +  +S FP  N Y + ++ + G  N   E  Y C
Sbjct: 144 LEHMLFMGSSEFPDENEYDSYLSKHGGSSNAFTETEYTC 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,177,663
Number of Sequences: 37544
Number of extensions: 79732
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)