Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J17
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    32   0.063
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    28   1.0  
AC024746-2|AAO38587.1|  163|Caenorhabditis elegans Hypothetical ...    28   1.0  
AC024746-1|AAO38586.1|  181|Caenorhabditis elegans Hypothetical ...    28   1.0  
AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23455-5|AAC46535.1|  305|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 170 ILTHAPYYRNSNFPLYNHYATDINPY 93
           +LTH P+     FPL N YA DI P+
Sbjct: 142 LLTHHPFDNTCKFPLPNSYAEDIIPF 167


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 39  ICVVTRVSSFFYLVYLAFVWINICGIMVIKRK 134
           + +VT+++S+ Y+  +    INI  I+V+ RK
Sbjct: 31  VAIVTQITSYEYIASVVCFLINIVHILVLTRK 62


>AC024746-2|AAO38587.1|  163|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.4b protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 120 PLCHRY*SIQRPNKPSKRMSLPL*LHKFVNAYLH 19
           P  +++ SI+ P  PS+R S P  +   V  YLH
Sbjct: 115 PSAYKFASIRTPPVPSQRRSFPTCMLGLVACYLH 148


>AC024746-1|AAO38586.1|  181|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.4a protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 120 PLCHRY*SIQRPNKPSKRMSLPL*LHKFVNAYLH 19
           P  +++ SI+ P  PS+R S P  +   V  YLH
Sbjct: 115 PSAYKFASIRTPPVPSQRRSFPTCMLGLVACYLH 148


>AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical
           protein cTel55X.1a protein.
          Length = 222

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 57  VSSFFYLVYLAFVWINICGIMV 122
           +++  ++VYL +VW++  G +V
Sbjct: 189 IAACMFIVYLGYVWLSFLGALV 210


>Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical
          protein T01H10.7 protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 50 NYTNSLMPTYTKLIP 6
          NY N+L P YTK+ P
Sbjct: 44 NYDNTLSPVYTKIDP 58


>U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical
           protein F11D5.5 protein.
          Length = 370

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 67  SFTWFIWPLYGLIS 108
           S  WF++PL+G+IS
Sbjct: 42  SQVWFVFPLFGMIS 55


>U23455-5|AAC46535.1|  305|Caenorhabditis elegans Hypothetical
           protein F55E10.6 protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 149 YRNSNFPLYNHYATDINP 96
           Y+NS F   +H A D+NP
Sbjct: 228 YKNSRFSRLSHCADDLNP 245


>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 152 YYRNSNFPLYNHYATDIN 99
           Y+  S+ PLYN+Y T  N
Sbjct: 76  YFMQSSSPLYNYYLTFYN 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,931,960
Number of Sequences: 27780
Number of extensions: 85455
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)