Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J16
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.16
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 28 0.38
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 0.67
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 2.7
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 3.5
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 3.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 4.7
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 25 4.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 6.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 6.2
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 24 6.2
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 24 8.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 24 8.2
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.2
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.5 bits (63), Expect = 0.16
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1
Query: 172 SPQGRLSPSGRRHPPSRDDSAYVS----SSTMHSPPRGSPFRPLETDRLYREPSIE--DD 333
S ++ SG HP S+D+S+ S S T S PR P + ++ EP E D
Sbjct: 386 STDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPR-KPLPTTTSPKVNPEPHSESISD 444
Query: 334 YRPIAP 351
RP P
Sbjct: 445 TRPSTP 450
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 28.3 bits (60), Expect = 0.38
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 139 SSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPR 270
++P YG R S + + + + + PP S+Y S+ST+ PR
Sbjct: 327 TTPLDTYGNRPSGK-KFNKNSKFRPPGSTISSYSSASTLRRLPR 369
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 244 SSTMHSPPRGSPFRPLETDRLYREPSIEDDYRP 342
SST+H PP + PL +L+++ I DD P
Sbjct: 361 SSTVHEPPSSNDSHPLL--QLFKDSKISDDDSP 391
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 118 SNDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSP 264
+ D +N S+P+ +SP L +G+ PP++ + A + ++ P
Sbjct: 415 TTDVINNSTPKEE--TEESPSTELPETGKEQPPNKAEPAVPTEASSTKP 461
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 118 SNDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSR----DDSAYVSSSTMHSP 264
SN ++G S +H ++ + S HPP R DDS S ++ SP
Sbjct: 111 SNITVDGDSKKHSLQLQEEEKSSESLDSHTHPPKRVRNEDDSLTFSKTSPVSP 163
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 238 VSSSTMHSPPRGSPFRP-LETDRLYREPSIED 330
+SS++ S PRGSP+R + + L EP +ED
Sbjct: 27 LSSNSRESTPRGSPWRAGMRSASLMTEP-LED 57
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 3.5
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = +1
Query: 118 SNDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRP--L 291
S R + + + KR S S +R+DS +SS SPP +P
Sbjct: 120 SQKRARNLTTKDYFAKRSESSSSASVSPISPSANRNDSKRQASSFRRSPPSSVHMKPSAF 179
Query: 292 ETDRLYREPSIEDDYRPIAP 351
++ R PS P P
Sbjct: 180 NGRKVSRRPSSSPPPIPSIP 199
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 4.7
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = +1
Query: 319 SIEDDYRPIAPDRK 360
+++DD+RPI PD++
Sbjct: 131 TLDDDFRPIVPDQE 144
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 247 STMHSPPRGSPFRPLETDRLYREPSIED 330
S S P G F P E ++ + PSIE+
Sbjct: 221 SLWKSLPEGETFTPQEAAKILKWPSIEE 248
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 6.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 196 SGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIED 330
SGRR D YVS +SP + P R L + + IE+
Sbjct: 1006 SGRRLLYGTDTGVYVSLRKANSPLQFKPVRALNIPNISQLEVIEE 1050
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 6.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSP 279
S G SP PP S VSSST P P
Sbjct: 394 SESGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKP 429
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 235 YVSSSTMHSPPRGSPFRPLETDRLYREPS 321
Y ++ +HSPP F D + +PS
Sbjct: 10 YPNTPPLHSPPESHTFSSQTDDSYFHKPS 38
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 23.8 bits (49), Expect = 8.2
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +1
Query: 214 PSRDDSAYVSSST----MHSPPRGSPFRPLETDRLYREPSIEDDYRPIAP 351
PSR+ +++ MH+ F PL+ + + S YRP+ P
Sbjct: 547 PSRETDEHLAQHVTYVHMHNEQPKMDFEPLDPNMIRHYISSARQYRPVVP 596
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.8 bits (49), Expect = 8.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYR 312
SP+ L S H + DS SS+M PP PF + L+R
Sbjct: 72 SPERELPTSPSHHANTEIDS----SSSMLPPPSSDPFSSPLSSSLHR 114
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 8.2
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +1
Query: 142 SPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPL 291
SP + SP G S R P R Y T S P + +PL
Sbjct: 20 SPERSQRRSQSPPGEQSAYHRERSPLRKRGNYYDDRTRASGPYPTFTKPL 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.132 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,655
Number of Sequences: 5004
Number of extensions: 24711
Number of successful extensions: 70
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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