Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J16
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 30 0.48
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 29 1.1
03_02_0488 - 8824980-8825267,8825364-8827775 29 1.5
01_07_0346 + 42889121-42890406,42896115-42896118 28 1.9
12_02_0640 - 21447470-21448309 28 2.5
12_02_0635 - 21430245-21431156 28 2.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 2.5
04_03_1017 + 21747044-21748051 28 2.5
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 2.5
12_02_0643 - 21461123-21461902 27 3.4
12_01_0724 - 6377023-6379392 27 4.4
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 27 4.4
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 27 4.4
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 27 4.4
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 27 4.4
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 27 4.4
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 4.4
02_03_0347 - 17999780-18000592,18000656-18003019 27 4.4
02_03_0116 - 15440263-15441024,15441097-15443451 27 4.4
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 27 4.4
11_03_0187 - 11334733-11334802,11334975-11335055,11336087-113361... 27 5.9
08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499 27 5.9
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 5.9
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 26 7.7
06_03_1247 - 28676578-28676730,28677019-28677177,28677314-286774... 26 7.7
03_02_0220 - 6531255-6532667 26 7.7
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 26 7.7
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 26 7.7
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 26 7.7
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 223 DDSAYVSSSTMHSPPRGSPFRPLETD 300
DD ++ + T+ SPPRGS P+ T+
Sbjct: 22 DDGSHQDTPTLQSPPRGSDAHPIPTE 47
>09_06_0177 + 21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 217 SRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIEDD 333
SR + V+S+ + + P G P P+ TD P EDD
Sbjct: 890 SRSNRETVNSTEISNKPIGGPTYPIYTDEEADRPDTEDD 928
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 139 SSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRG 273
SS +H +P P G HP +RDDS SSS + P G
Sbjct: 694 SSSQHSSRSMSTPTDCSCPLGNFHPNTRDDSC-ASSSVLAVLPNG 737
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 118 SNDRLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
+ +R +G VYG +PQG L +G RHPP
Sbjct: 59 AGERRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>12_02_0640 - 21447470-21448309
Length = 279
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 163 KRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHS--PPRGSPFRPLETDR-LYREPSIEDD 333
K+ PQ P R PP R +S + PP GSP +P + +P D
Sbjct: 197 KKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKKPATPGAVVVEQPGPPTD 256
Query: 334 YR 339
+R
Sbjct: 257 HR 258
>12_02_0635 - 21430245-21431156
Length = 303
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 163 KRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHS--PPRGSPFRPLETDR-LYREPSIEDD 333
K+ PQ P R PP R +S + PP GSP +P + +P D
Sbjct: 194 KKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKKPATPGAVVVEQPGPPTD 253
Query: 334 YR 339
+R
Sbjct: 254 HR 255
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPPSRDD 228
R +G VYG +PQG L +G RHPP D
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPPVAHD 97
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = +1
Query: 157 YGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDY 336
Y P+ SP PSR +A T SPPR P + + DY
Sbjct: 148 YTPESPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAASPDY 207
Query: 337 RPIAPDRK 360
P P R+
Sbjct: 208 SPSTPPRR 215
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 349 ALSXGNHPQLRARGTGDLFQVDGMENHAG 263
ALS G PQL+ R D++ D E H G
Sbjct: 469 ALSAGFGPQLKKRNAEDVYYRDDNEGHDG 497
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +1
Query: 163 KRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLY 309
K+ PQ P R PP R +S +PP P P R Y
Sbjct: 189 KKKKPQSSRRPPSRTPPPERRESPSPLRGRPRTPPPPRPRPPTTPPRPY 237
>12_01_0724 - 6377023-6379392
Length = 789
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 27.1 bits (57), Expect = 4.4
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +1
Query: 124 DRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDD--SAYVSSSTMHSPPRGSPFRPLET 297
DR PR G+ D + R P GR PP R D Y P S RP
Sbjct: 159 DRHAAGRPR---GRGDDDRDRDPPRGRSPPPYRGDDRGRYDGPPDYMLPDHPSSLRPARK 215
Query: 298 D-RLYREPSI 324
D + EP +
Sbjct: 216 DGEFFGEPGM 225
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 197 LDVVIHHHETILHMYLLQLCIVPRVVLHSVHLKQIACTASPQ 322
+D+++ H +I + Y CI + L ++ K IAC SPQ
Sbjct: 587 MDLLVSHGSSI-NQYKTPRCIESSLALKLLNSKVIACFFSPQ 627
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 115 ASNDRLNGSSPRHVYGKRDSPQGR-LSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPL 291
A D NG S R S +GR +SP RH + ++ S + S RG F P
Sbjct: 233 ADRDESNGESGR------SSRRGRSVSPEEHRHRGRHESQSHQSPRSSRSAARGEDFMPY 286
Query: 292 E 294
+
Sbjct: 287 D 287
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>01_06_1164 -
35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 RLNGSSPRHVYGKRDSPQGRLSPSGR--RHPP 216
R +G VYG +PQG L +G RHPP
Sbjct: 62 RRDGERRLLVYGDGSTPQGALQAAGALLRHPP 93
>11_03_0187 -
11334733-11334802,11334975-11335055,11336087-11336155,
11337282-11337601
Length = 179
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 176 RKVDCHRLDVVIHHHETILHMYLLQLCIVPRVVLHSV 286
+K C VV + I+H+ L+ C P V+ HSV
Sbjct: 117 KKSICRFQSVVFTIRKCIIHVVFLKNCTAPVVLKHSV 153
>08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499
Length = 265
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 178 QGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETD 300
+GRL P R PP + D S + +P + PF P E +
Sbjct: 214 KGRLLPKAARPPPKQRDKV-DSIGRLPAPTKPLPFTPEELE 253
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = +1
Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDYRPIAP 351
SP GR +GRR P + + +P + +T + ++ DD+ + P
Sbjct: 530 SPNGRSGGTGRRPTPGKVQEGNPDQTQESNPDQSQEMNANQTQEHIDDLNVNDDHWSVHP 589
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 163 KRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRP 288
+RD P P R PS +++T SPP +P P
Sbjct: 51 RRDEPTPTPIPPARAATPSSQADDVPTTTTATSPPSSAPSSP 92
>06_03_1247 -
28676578-28676730,28677019-28677177,28677314-28677412,
28677504-28677554,28677712-28678983,28680209-28680412,
28682330-28682439,28684962-28685067
Length = 717
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 151 HVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSS 249
H YG++D P+ LS S P+ D + SS
Sbjct: 257 HPYGQQDEPEDLLSTSTTEDQPAELDPELLDSS 289
>03_02_0220 - 6531255-6532667
Length = 470
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 184 RLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPS 321
RL+P RR RD S + SPP S P + PS
Sbjct: 7 RLAPLTRRLSTCRDGDLAALLSVLRSPPASSTSLPRALSSAFPSPS 52
>02_01_0674 +
5020118-5020202,5020301-5020436,5021075-5021140,
5021219-5021290,5021362-5021433,5024242-5024301,
5024494-5024565,5024655-5024720,5024798-5024863,
5024945-5025273,5025713-5025969,5026213-5026484,
5026580-5026715,5026833-5026972,5027051-5027207,
5027476-5027634
Length = 714
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 145 PRHVYGKRDSPQGRLSPSGR 204
P H G D+P+G +SP+G+
Sbjct: 261 PSHPRGSGDAPEGSVSPAGQ 280
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 26.2 bits (55), Expect = 7.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 136 GSSPRHVYGKRDSPQGRLSPSGRRH--PPSRDDSAYVSSSTMHSPPRGSPF 282
G+ P +RD +S S RRH P D +S SPPR PF
Sbjct: 108 GTEPSPSLDRRDP----MSRSARRHRQPGGIGDEILQRASISSSPPRADPF 154
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 83 LRLHRLFDLHT---LVMTD*TDLHQDMYMGNEIHRKVDCHRLDVVIHHHETILHMY 241
+R RL DL T +MT T+ ++ M + + VD R+++ H +I+H +
Sbjct: 701 MREARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIATHDWNSIIHAF 756
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,015,230
Number of Sequences: 37544
Number of extensions: 177925
Number of successful extensions: 508
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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