Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J16
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    28   2.3  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    27   3.0  
AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical ...    27   3.0  
AL117207-19|CAB60401.2|  142|Caenorhabditis elegans Hypothetical...    27   3.9  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    27   5.2  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    27   5.2  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    26   6.9  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 154  VYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSP-PRGSPFR 285
            V  KR SPQ  +SP  R  PP R+ + +++S+    P P   P R
Sbjct: 3043 VVNKRRSPQPPVSPIPRA-PPLRNSNGFLASTNNFQPLPTDIPMR 3086


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 SPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRP 288
           SPR       +P+ R SP  RR P  R   +  SSS   SPP   P RP
Sbjct: 477 SPRRRRSPAAAPRRRQSPQRRRSPRRRRSPS--SSSRSRSPP-PPPRRP 522


>U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical
           protein B0353.1 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDYRPIAP 351
           SP G      ++   +   S ++S S+  S    SP  P ET   YR      DY+ I P
Sbjct: 26  SPSGAKRKIRQKREEASRPSPFLSPSSSSSQTSISP-TPTETSSNYRSLVDSGDYQSILP 84

Query: 352 D 354
           D
Sbjct: 85  D 85


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 146  QDMYMGNEIHRKVDCHRLDVVIHHHETILHMYLLQLCI--VPRVVLHSVHLKQIACTASP 319
            Q MY+  E++R      + VV H  + I +    Q C   +   +LHSV L   +C    
Sbjct: 1473 QLMYLHEELNRYDHASEVSVVFHKPQNISYYSTGQSCFGCLCNQLLHSVALLHSSCDDEN 1532

Query: 320  QLRMI 334
             L +I
Sbjct: 1533 ALNLI 1537


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 146  QDMYMGNEIHRKVDCHRLDVVIHHHETILHMYLLQLCI--VPRVVLHSVHLKQIACTASP 319
            Q MY+  E++R      + VV H  + I +    Q C   +   +LHSV L   +C    
Sbjct: 1473 QLMYLHEELNRYDHASEVSVVFHKPQNISYYSTGQSCFGCLCNQLLHSVALLHSSCDDEN 1532

Query: 320  QLRMI 334
             L +I
Sbjct: 1533 ALNLI 1537


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 23/72 (31%), Positives = 28/72 (38%)
 Frame = +1

Query: 121 NDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETD 300
           NDR    SPR    +  SP+ R     RR   SRD      S +  S    SP R     
Sbjct: 79  NDRHGSRSPRR---RSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135

Query: 301 RLYREPSIEDDY 336
              R PS + D+
Sbjct: 136 SESRSPSPKRDF 147


>AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical
           protein Y43F11A.5 protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 205 RHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDRLYREPSIED 330
           R P S   +A ++ S   +PP+ S   P E   + ++P IED
Sbjct: 379 RAPSSSPPAALLNHSYCENPPKTSENWPQELKLIEQKPQIED 420


>AL117207-19|CAB60401.2|  142|Caenorhabditis elegans Hypothetical
           protein Y60A3A.16 protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 245 LQLCIVPRVVLHSVHLKQIACTASPQLRMIT 337
           +++C +PR+ L+ VH ++I+ ++S    +IT
Sbjct: 104 IEVCTLPRLYLNGVHFQRISGSSSDFKNIIT 134


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 23/73 (31%), Positives = 28/73 (38%)
 Frame = +1

Query: 121 NDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETD 300
           NDR    SPR    +  SP+ R     RR   SRD      S +  S    SP R     
Sbjct: 79  NDRHGSRSPRR---RSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135

Query: 301 RLYREPSIEDDYR 339
              R PS + D +
Sbjct: 136 SESRSPSPKRDLK 148


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 124  DRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSP 279
            D L  ++ R  Y ++    GR S S RR     DD+  VSS     P +G P
Sbjct: 892  DLLPEAATRKKYERKSQTPGRRSLSSRR-----DDTTPVSSMAAAPPKKGRP 938


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 23/71 (32%), Positives = 27/71 (38%)
 Frame = +1

Query: 121 NDRLNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETD 300
           NDR    SPR    +  SP+ R     RR   SRD      S +  S    SP R     
Sbjct: 79  NDRHGSRSPRR---RSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRR 135

Query: 301 RLYREPSIEDD 333
              R PS + D
Sbjct: 136 SESRSPSPKRD 146


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDR 303
           SP+ R SPS RR   SRD           S  R S  R  + DR
Sbjct: 277 SPRRRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDR 320


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 172 SPQGRLSPSGRRHPPSRDDSAYVSSSTMHSPPRGSPFRPLETDR 303
           SP+ R SPS RR   SRD           S  R S  R  + DR
Sbjct: 277 SPRRRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDR 320


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 130 LNGSSPRHVYGKRDSPQGRLSPSGRRHPPSRDDSAYVSSSTMHSP 264
           L+G +PR       S Q     S R H  SR      +SST+ +P
Sbjct: 192 LSGQNPRQQVHATPSHQIPRHQSSRTHQNSRQQVPSATSSTLQNP 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,548,228
Number of Sequences: 27780
Number of extensions: 148332
Number of successful extensions: 452
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)