Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J16
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   1.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   1.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   3.3  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   7.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 235 YVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDYRPI 345
           YV+  + + PPRG+     +   L     I + Y P+
Sbjct: 324 YVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPV 360


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 235 YVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDYRPI 345
           YV+  + + PPRG+     +   L     I + Y P+
Sbjct: 35  YVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPV 71


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 334 NHPQLRARGTGDLFQVDGMENHAGDY 257
           N P++R    G L+       HAG+Y
Sbjct: 355 NEPEIRVFNDGSLYLTKVQLIHAGNY 380


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 235 YVSSSTMHSPPRGSPFRPLETDRLYREPSIEDDYRPI 345
           YV+  + ++PP+G+     +   L     I + Y P+
Sbjct: 324 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 360


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 191 HRLDVVIHHHETILHMYLL 247
           +R  VV HH +   H YL+
Sbjct: 115 NRKGVVFHHDDARPHTYLV 133


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 202  RRHPPSRDDSAYVSSSTMHSPP 267
            +R P  RD+  Y++      PP
Sbjct: 1634 KRRPDLRDELGYIAPPNRKLPP 1655


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 YVSSSTMHSPPRGSPFRPLETDR 303
           Y S S MHS      + P ET++
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQ 349


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 YVSSSTMHSPPRGSPFRPLETDR 303
           Y S S MHS      + P ET++
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQ 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,785
Number of Sequences: 438
Number of extensions: 1792
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)