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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J15
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   118   1e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    60   4e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    59   9e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    52   1e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    42   1e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    41   3e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    37   4e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    34   0.003
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    31   0.036
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    30   0.063
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   0.78 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.4  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   2.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    24   3.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    24   3.1  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    24   3.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   4.1  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    24   4.1  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    24   4.1  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    24   4.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    23   5.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   5.5  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    23   7.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   7.2  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   7.2  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    23   9.6  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    23   9.6  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    23   9.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    23   9.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    23   9.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    23   9.6  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    23   9.6  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    23   9.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  118 bits (285), Expect = 1e-28
 Identities = 60/86 (69%), Positives = 64/86 (74%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
           TAA SSSLEKS   P  +      +   A EALFQPS LG+E  GIHE TYNSIMKCDVD
Sbjct: 229 TAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVD 288

Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
           IRKDLY N V+SGGTTMYPGIADRMQ
Sbjct: 289 IRKDLYGNVVMSGGTTMYPGIADRMQ 314


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 60.5 bits (140), Expect = 4e-11
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +3

Query: 93  AXEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 260
           A E LF P  +G EA G+H   + SI+  D+D+R  LY+N VLSGG+T+  G  +R
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317



 Score = 26.6 bits (56), Expect = 0.59
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 41  YELPDGQVITIGNERF 88
           Y+LPD Q IT+G E F
Sbjct: 245 YQLPDNQTITLGTECF 260


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 59.3 bits (137), Expect = 9e-11
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +3

Query: 99  EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
           E LFQP  +G E  G+ E  +++I   DVDIRK LY   VLSGG++MY G+  R++
Sbjct: 259 ECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLE 314



 Score = 31.9 bits (69), Expect = 0.016
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 41  YELPDGQVITIGNERFRC 94
           Y LPDG+VI +G+ER+ C
Sbjct: 240 YTLPDGRVIKVGSERYEC 257


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 52.4 bits (120), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
 Frame = +3

Query: 99  EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 251
           E LF PSF    +          G+HE  Y SI+ CD ++R  L  N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359

Query: 252 ADRMQ 266
           ++R+Q
Sbjct: 360 SERLQ 364



 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 41  YELPDGQVITIGNERFR 91
           +E PDG     G ERFR
Sbjct: 281 FEFPDGVTHKFGQERFR 297


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 41.9 bits (94), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 90  VAXEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
           +A E  F P     +    + E   N +    +D+RK LY N VLSGG+T++    +R+Q
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 141 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQ 367


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 37.1 bits (82), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +3

Query: 99  EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
           E +F PS +G++  GI E   + + +  ++ ++ L +N +++GG    PG+  R++
Sbjct: 600 EVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIK 655


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 34.3 bits (75), Expect = 0.003
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 99  EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 263
           E LF PS + +   GI E    S+     +I+  L  N V  GG   +PG   R+
Sbjct: 285 ELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRL 339


>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 30.7 bits (66), Expect = 0.036
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 160 YVVSWMPQASIPKNEGWKRASXATEPFVSDCDDLTVGEFVDFSRELLE 17
           ++ SW   A   +NE WK+   +    +   +D  +G+  + S+ L E
Sbjct: 63  FLSSWERYADALENESWKQEKYSNTDLLESLNDQQIGQLYELSKALQE 110


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 29.9 bits (64), Expect = 0.063
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 35  EVYEL-PDGQVITIGNERFRCXRGSLP--ALVLGYGSLW 142
           EV +L P G+++  G+   R  +  LP   L++GYG LW
Sbjct: 657 EVSKLAPTGEILPTGSFAIRAKKNYLPPTVLIMGYGILW 695


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSSQSETKGS 89
           T +SSSS   S++S + KSS S +K S
Sbjct: 143 TTSSSSSSSSSSSSSSSKSSSSSSKSS 169


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 18  SSSSLEKSTNSPTVKSSQSETKGSVAXEAL 107
           SSSS+  S++SP+  SS + T  S++  ++
Sbjct: 211 SSSSVVSSSSSPSSSSSSTLTSSSLSTSSI 240



 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  ASSSSLEKSTNSPTVKSSQSETKGS 89
           +SSS++  S++SP+  S  S T  S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSS 362


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 260 TVGNTRVHGGTTRQYCVGVQVFTDVNVTLHDGVVCRLVD 144
           T+G+   +GG       GV V T   VTLH G  C + D
Sbjct: 227 TLGDDWPNGGEI-DIVEGVNVGTSNQVTLHTGDGCEMED 264


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   GTAASSSSLEKSTNSPTVKSSQSETKGSVA 95
           G  +SSS+   S  SPTV S+     G++A
Sbjct: 216 GNISSSSAPLASDQSPTVSSNHIHASGNLA 245


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 KDLYANTVLSGGTTMYPGIADRMQ 266
           K+LY++ ++ GG   +PG A  ++
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLE 550


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 237 WWYHQTILCWRTSLYGCQRH 178
           W+Y++   CW +   G  +H
Sbjct: 134 WYYNEKFCCWYSETMGMFKH 153


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 72  SETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKC 179
           S+T    A  A + P F G+    IH  T +S+  C
Sbjct: 191 SDTFSEFASHAEY-PGFSGLTPFSIHSPTASSVRSC 225


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 18  SSSSLEKSTNSPTVKSSQSETKGS 89
           S   + +STN PT  S  S  KG+
Sbjct: 303 SKQEMSQSTNDPTANSMSSLLKGT 326


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   GTAASSSSLEKSTNSPTVKSSQSETKGSVAXE 101
           GT ASSSS +   +    K+ + ETK   A E
Sbjct: 303 GTPASSSSYDALFDEEVEKAIEEETKSVQANE 334


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 163 LYVVSWMPQASIPKNEGWKRASXATEPFVSDCDDLTVG 50
           ++ V  + ++++P  + WK     T  F++ C D   G
Sbjct: 385 IHPVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKG 422


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -3

Query: 247 PGYMVVPPDNTVLAYKSLRMSTSHFM 170
           P  +V P D+ ++AY+ +  +T++++
Sbjct: 774 PDILVSPADSRIVAYECIEKATTYWI 799


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 122  LGYGSLWHPRDDIQLHHE 175
            + + S W+P D++ +H E
Sbjct: 1810 VSFDSTWYPVDEVSVHQE 1827


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 144 IHETTYNSIMKCDVDIRKDLYA 209
           ++  + + I KCD D+ ++LY+
Sbjct: 7   LNSVSSSEIEKCDEDVEEELYS 28


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 200 LVRQHSIVWWYHHVPWYCR 256
           LV  +S+ W Y   PW  R
Sbjct: 234 LVTSYSVSWKYSDTPWATR 252


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSSQSETKGS 89
           +++SSSS   S++S + KSS S +  S
Sbjct: 180 SSSSSSSKSSSSSSSSSKSSSSSSSSS 206



 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSSQSETKGS 89
           +++SSSS  KS+ SP+   S S+   S
Sbjct: 198 SSSSSSSSSKSSASPSSSKSSSKFSSS 224


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 116 GLEESLXGNGTF 81
           GLE S  GNGTF
Sbjct: 201 GLESSTKGNGTF 212


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 175 FMMELYVVSWMPQASIPKNE 116
           FM  LYV S++ Q  I KN+
Sbjct: 136 FMFGLYVASFIVQIFIAKND 155


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -3

Query: 247 PGYMVVPPDNTVLAYKSLRMSTSHFMMELYVVSWMPQASIPKNEGWKRASXATEPF 80
           P   + P D+ VL  K+  +  S+     Y + +     +  +  WK A    E F
Sbjct: 574 PDMWIHPKDSLVLQIKAAEVVVSNRFKTNYTLRFPRLEKVRLDRSWKDALTINEFF 629


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 172 MMELYVVSWMPQASIPKNEGW 110
           +  ++ V+W P  S+P +  W
Sbjct: 141 LCRIHSVAWSPLVSLPSSSPW 161


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   HRCLQQLPREVYELPDGQVITIGN 79
           H   Q+   EVYE+P+  +I  GN
Sbjct: 918 HVVSQRCEDEVYEIPNVTIIENGN 941


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 210  WRTSLYGCQRHTS*W 166
            WR  L GCQ++   W
Sbjct: 1469 WRKRLEGCQKNVDVW 1483


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 3   DGTAASSSSLEKSTNSPTVKSSQSE 77
           D TAA SS    S +  TVK  +++
Sbjct: 199 DSTAAGSSKEHSSPHDETVKKEEND 223


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 3   DGTAASSSSLEKSTNSPTVKSSQSETKGSV 92
           +GT   S   + +  S  +  SQ+ETKG+V
Sbjct: 228 EGTVTRSKEAKVAVFSCPLDISQTETKGTV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,220
Number of Sequences: 5004
Number of extensions: 19442
Number of successful extensions: 100
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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