Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J15
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 128 4e-31
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 128 4e-31
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 128 4e-31
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 128 4e-31
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 128 4e-31
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 128 4e-31
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 128 7e-31
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 128 7e-31
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 128 7e-31
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 128 7e-31
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 119 3e-28
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 71 1e-13
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 63 3e-11
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 61 1e-10
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 50 3e-07
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 50 3e-07
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 48 1e-06
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 38 7e-04
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 30 0.26
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 0.79
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 27 1.4
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 27 1.4
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 27 1.8
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 27 2.4
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 27 2.4
Z81134-3|CAB03446.1| 991|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical pr... 26 3.2
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 26 4.2
Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical p... 25 5.6
Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical pr... 25 5.6
U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein. 25 5.6
U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone... 25 5.6
AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear recep... 25 5.6
AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear recep... 25 5.6
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical ... 25 7.4
AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical... 25 7.4
AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine r... 25 7.4
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 25 9.7
U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical pr... 25 9.7
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical... 25 9.7
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 186 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 245
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 246 IRKDLYANTVLSGGTTMYPGIADRMQ 271
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 216 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 275
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 276 IRKDLYANTVLSGGTTMYPGIADRMQ 301
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 128 bits (310), Expect = 4e-31
Identities = 64/86 (74%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EALFQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 128 bits (308), Expect = 7e-31
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EA+FQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 128 bits (308), Expect = 7e-31
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EA+FQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 128 bits (308), Expect = 7e-31
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EA+FQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 128 bits (308), Expect = 7e-31
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
TAASSSSLEKS P + + EA+FQPSFLGME+ GIHET+YNSIMKCD+D
Sbjct: 230 TAASSSSLEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDID 289
Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 290 IRKDLYANTVLSGGTTMYPGIADRMQ 315
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 119 bits (286), Expect = 3e-28
Identities = 59/85 (69%), Positives = 65/85 (76%)
Frame = +3
Query: 12 AASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVDI 191
AASSSSLEKS P + + E LFQP+F+GME GIHETTY SIMKCDVDI
Sbjct: 230 AASSSSLEKSYELPDGQVITIGNERFRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDI 289
Query: 192 RKDLYANTVLSGGTTMYPGIADRMQ 266
RKDLYANTVLSGGT+M+PGIADRMQ
Sbjct: 290 RKDLYANTVLSGGTSMFPGIADRMQ 314
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +3
Query: 3 DGTAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCD 182
D T ++S++ S P + A E LF+P +G E G+ SIMKCD
Sbjct: 226 DPTKVENNSVKSSYALPDTTKIEISNSLFRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCD 285
Query: 183 VDIRKDLYANTVLSGGTTMYPGIADRM 263
VD+R+ LY+N VLSGGTT++ G DR+
Sbjct: 286 VDLRQTLYSNIVLSGGTTLFKGFGDRL 312
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 62.9 bits (146), Expect = 3e-11
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +3
Query: 93 AXEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
A E LFQP + +E G+ E + I D+D R D Y + VLSGGTTMYPG+ R++
Sbjct: 261 APEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLE 318
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 41 YELPDGQVITIGNERF 88
Y LPDG+VI +G ERF
Sbjct: 244 YTLPDGRVIRLGGERF 259
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 27 SLEKSTNSPTVKSS-QSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 203
SL+ T SP +++ + + E LF+P G++ G+H+ + +I++C +D R+ L
Sbjct: 412 SLDAFTPSPGMQTRFDIDNSRFLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTL 471
Query: 204 YANTVLSGGTTMYPGIADRMQ 266
Y N L+GG ++ PGIA++++
Sbjct: 472 YRNIYLAGGASLMPGIAEKLE 492
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +3
Query: 36 KSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 215
K + P + S + E LF PS + ++ CG+ E SI +C +R L N
Sbjct: 253 KEPHDPQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENI 312
Query: 216 VLSGGTTMYPGIADRMQ 266
++ GG++ +PG +R++
Sbjct: 313 IVIGGSSCFPGFRERLE 329
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +3
Query: 36 KSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 215
K + P + S + E LF PS + ++ CG+ E SI +C +R L N
Sbjct: 253 KEPHDPQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENI 312
Query: 216 VLSGGTTMYPGIADRMQ 266
++ GG++ +PG +R++
Sbjct: 313 IVIGGSSCFPGFRERLE 329
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 99 EALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
E F P F E I +T I +C +D+R+ LY N VLSGG+TM+ A ++Q
Sbjct: 287 EIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQ 343
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 38.3 bits (85), Expect = 7e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 168 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 266
+ KC +D+RK L+ N +L+GG + PG+ R++
Sbjct: 198 VSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLE 230
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 29.9 bits (64), Expect = 0.26
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 180 DVDIRKDLYANTVLSGGTTMYPGIADRM 263
D+DIR L++N ++GG ++ G +R+
Sbjct: 344 DIDIRPTLFSNVTVTGGNSLILGFTERL 371
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 195 YGCQRHTS*WSCMSSRGCHKLPYPRTRAGREP 100
+ CQRH SC G H PY + R P
Sbjct: 423 WNCQRHAGFESCSCDDGYHLSPYDKKTCLRSP 454
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 6 GTAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHET 155
G++++SSS ST++P S++ A + F CG+H T
Sbjct: 176 GSSSASSSSANSTSTPKNTISKANRSSGGANNSQFSTEDRECVNCGVHNT 225
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 6 GTAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHET 155
G++++SSS ST++P S++ A + F CG+H T
Sbjct: 248 GSSSASSSSANSTSTPKNTISKANRSSGGANNSQFSTEDRECVNCGVHNT 297
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 6 GTAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHET 155
G++++SSS ST++P S++ A + F CG+H T
Sbjct: 176 GSSSASSSSANSTSTPKNTISKANRSSGGANNSQFSTEDRECVNCGVHNT 225
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 224 RQYCVGVQVFTDVNVTLHDGVVCRLVDATSFH 129
R C+ V++ D H GV+C SFH
Sbjct: 23 RLVCIKVRMLDDTVAVFHLGVICFFFCVVSFH 54
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 106 RASXATEPFVSDCDDLTVGEFVDFSRELLEAAVP 5
R S AT P VS C+DL + SR + + +P
Sbjct: 723 RNSIATSPVVSLCEDLKASKKSKKSRSISSSPIP 756
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 106 RASXATEPFVSDCDDLTVGEFVDFSRELLEAAVP 5
R S AT P VS C+DL + SR + + +P
Sbjct: 723 RNSIATSPVVSLCEDLKASKKSKKSRSISSSPIP 756
>Z81134-3|CAB03446.1| 991|Caenorhabditis elegans Hypothetical
protein T28D6.4 protein.
Length = 991
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 29 PREVYELPDGQVITIGNERFRC 94
P E++ +PD IG E FRC
Sbjct: 300 PSEIFHVPDIWFQLIGEENFRC 321
>Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical
protein F40F9.10 protein.
Length = 502
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 202 KSLRMSTSHFMMELYVVSWMPQASIPK---NEGWKRASXATEPFVSDCDD 62
K + S S ++E +P+ I K NEGW R + F DC D
Sbjct: 390 KKKKFSRSASIVEEMENRVLPEVKIWKEYENEGWARLTDRHREFAKDCAD 439
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 211 LAYKSLRMS-TSHFMMELYVVSWMPQASIPKNEGWKRASXATEPFVSDCDDLTVGEFVDF 35
+ ++SL+ S T+H + Y++S + + W + E ++ CD T+ + F
Sbjct: 643 VVFESLKRSLTNHAFSQPYMLSKYFNELLVVEKVWSK-----EQLLAVCDSATLEDVQGF 697
Query: 34 SRELLEA 14
S+EL +A
Sbjct: 698 SKELFQA 704
>Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical
protein ZC15.1 protein.
Length = 875
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 157 VVSWMPQASIPKNEGWKRASXATEPFVSDCDDLTVGEFVD 38
+V+W A K E W T ++ C +T+GE+ D
Sbjct: 564 IVNW---ARFLKQEDWTLVQFQTRYHLAACGRITIGEWTD 600
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 198 LYGCQRHTS*-WSCMSSRGCH 139
L+ C+ H S W C+SS CH
Sbjct: 314 LFECEAHGSKIWQCISSPSCH 334
>Z71258-12|CAJ30220.1| 555|Caenorhabditis elegans Hypothetical
protein C01H6.5f protein.
Length = 555
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 14 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 55
>Z71258-8|CAD30427.1| 553|Caenorhabditis elegans Hypothetical
protein C01H6.5b protein.
Length = 553
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 14 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 55
>Z71258-7|CAA95782.2| 588|Caenorhabditis elegans Hypothetical
protein C01H6.5a protein.
Length = 588
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 49 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 90
>U51136-1|AAA96057.1| 553|Caenorhabditis elegans CHR3 protein.
Length = 553
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 14 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 55
>U13075-1|AAA96983.1| 553|Caenorhabditis elegans steroid hormone
receptor familymember CHR3 protein.
Length = 553
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 14 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 55
>AF332203-1|AAK17974.1| 588|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 588
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 49 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 90
>AF332202-1|AAK17973.1| 573|Caenorhabditis elegans nuclear receptor
NHR-23 protein.
Length = 573
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGME 134
T + SSL+ S + T KS +++ G + +F P + E
Sbjct: 34 TLHAKSSLQPSLSIETPKSKENDESGCESSNCMFHPHTIKSE 75
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 DGTAASSSSLEKSTNSPTVKSSQSETKGS 89
DG+ SS+ ++ T+ P K S S ++GS
Sbjct: 250 DGSIPSSNDYKELTDVPGTKPSSSASRGS 278
>AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical
protein F08B6.3 protein.
Length = 301
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 DGTAASSSSLEKS-TNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIH 149
DGT A S E TNS K Q + V ALF + EA +H
Sbjct: 244 DGTTAGSYEAESLLTNSDDDKDGQLSYEEIVKHHALFAKTEAAQEADHLH 293
>AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical
protein F57B10.1 protein.
Length = 690
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 9 TAASSSSLEKSTNSPTVKSSQSETK 83
T A+SSS STN VKSS E +
Sbjct: 225 TPATSSSSSSSTNGGFVKSSTGERR 249
>AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine
receptor, class z protein56 protein.
Length = 356
Score = 25.0 bits (52), Expect = 7.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -1
Query: 258 GRQYQGTWWYHQTILCWRTSLYG 190
GR ++ +WY+ +L W + G
Sbjct: 174 GRMFKNAYWYNPELLFWSWHMLG 196
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +3
Query: 132 EACGIHETTYNSIMKCDVDIRKDLYANTVL 221
+AC + ++ +K + I+K+++ NT+L
Sbjct: 95 DACFVWTEAHSKRIKVKITIQKEVFTNTIL 124
>U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical
protein F45F2.10 protein.
Length = 980
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 DGTAASSSSLEKSTNSPTVKSSQS-ETKGSVAXE 101
D + SSSS +++ S + +SSQS ++ GS+ E
Sbjct: 31 DSSGGSSSSSSETSGSSSDQSSQSGDSDGSIGFE 64
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -3
Query: 205 YKSLRMS-TSHFMMELYVVSWMPQASIPKNEGWKRASXATEPFVSDCDDLTVGEFVDFSR 29
++SL+ + T+H + Y+++ + ++ W + E ++ CD +T+ F+R
Sbjct: 618 FESLKRTLTNHAFSQPYLLTQHYNQLLIVDKVWSK-----EQLLAVCDSVTLENVQGFAR 672
Query: 28 ELLEA 14
E+L+A
Sbjct: 673 EMLQA 677
>AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical
protein F46F5.5 protein.
Length = 322
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 36 KSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIM 173
+ST+ PT + + S++KG+ P+ + E T N +M
Sbjct: 97 RSTSEPTRRQAPSDSKGTNQRHHRTPPASSSPQVVTFGECTVNGVM 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,792
Number of Sequences: 27780
Number of extensions: 110301
Number of successful extensions: 445
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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