Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J15
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             135   8e-35
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   6.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   6.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  135 bits (327), Expect = 8e-35
 Identities = 68/86 (79%), Positives = 70/86 (81%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSSQSETKGSVAXEALFQPSFLGMEACGIHETTYNSIMKCDVD 188
           TAASSSSLEKS   P  +      +     EALFQPSFLGMEACGIHETTYNSIMKCDVD
Sbjct: 4   TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVD 63

Query: 189 IRKDLYANTVLSGGTTMYPGIADRMQ 266
           IRKDLYANTVLSGGTTMYPGIADRMQ
Sbjct: 64  IRKDLYANTVLSGGTTMYPGIADRMQ 89


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 221
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 224 WWYHHVPWYC 253
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 224 WWYHHVPWYC 253
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = +2

Query: 26  LPREVYELPDGQVITIGNERFRCXRGSLPALVL--GYGSLWHPRDDIQLHHEV 178
           LP        G V T+G     C    LP+L L      L+ P     +H +V
Sbjct: 448 LPPSATRYDLGAVATVGTTVAPCFEEPLPSLPLPGADDDLFGPASPAYVHEDV 500


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 200 VFTDVNVTLHDGVVC 156
           +F  +NV LH  V+C
Sbjct: 11  LFVIINVLLHGQVIC 25


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 9   TAASSSSLEKSTNSPTVKSS 68
           + ASS + ++S  SP+V  S
Sbjct: 186 STASSRNSDRSAGSPSVSES 205


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 221 VWWYHHVPWYCRPYA 265
           +W  HH+ W    +A
Sbjct: 61  IWTDHHLKWNASEFA 75


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 139 QASIPKNEGWKR 104
           +  IPK+ GW++
Sbjct: 210 EKKIPKSSGWRK 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,079
Number of Sequences: 438
Number of extensions: 1362
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)