Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J13
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    26   4.9  
06_01_0260 + 1923865-1924290                                           25   8.5  

>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 170 FLHITSL*QIYIDNNSLTIVV 108
           F H+ SL  IY+  NSL IVV
Sbjct: 485 FAHLASLESIYLPYNSLEIVV 505


>06_01_0260 + 1923865-1924290
          Length = 141

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 69  GSSSAATVKTD*ANYDCKTII 131
           GSSSAA  K D   YD +T++
Sbjct: 120 GSSSAAPAKWDKVEYDVETLL 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,445
Number of Sequences: 37544
Number of extensions: 33963
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)