Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J13
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 91  TVAAELDPPRP 59
           TV A +DPP P
Sbjct: 173 TVVASMDPPEP 183


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 38  INSNCIITNNP 6
           +NS C +TN+P
Sbjct: 345 LNSTCSVTNSP 355


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 180 SMLVFTHYKFITNLY 136
           +M V  ++ F+TNLY
Sbjct: 911 TMKVVKYHLFLTNLY 925


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 180 SMLVFTHYKFITNLY 136
           +M V  ++ F+TNLY
Sbjct: 949 TMKVVKYHLFLTNLY 963


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 170 FLHITSL*QIYIDNNSLT 117
           + H+T +    ID NS+T
Sbjct: 64  YFHVTVMGLDSIDENSMT 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,702
Number of Sequences: 438
Number of extensions: 590
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)