Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J12
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 67 1e-12
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 51 1e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 5e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 47 1e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 3e-06
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 6e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 1e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 8e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.002
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.003
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.004
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.007
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.009
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.012
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.012
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.029
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.066
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.066
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.088
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.27
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.27
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 0.62
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.82
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.1
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 1.4
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 2.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 4.4
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 5.8
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 7.6
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 7.6
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 7.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 7.6
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 66.9 bits (156), Expect = 1e-12
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Frame = +2
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQS-LKIRRPHDYQPMPGTENPAINVPAGVIST 268
++NFA LE + ++ T ++ LK +R +Y T +
Sbjct: 244 EENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNYIVPQITPEVSQKRSDDYAKN 303
Query: 269 VVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISM 448
V DS KI+I LP L EDQV ELL FG L +F L+K+ + G SKG+ F E+ + S
Sbjct: 304 DVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSD 363
Query: 449 TDQAIAG 469
+ AI+G
Sbjct: 364 AEVAISG 370
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 50.8 bits (116), Expect = 1e-07
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+F+G +P ++E Q+ E+ G ++ F LV D TG KGY F E+ D T A+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 48.4 bits (110), Expect = 5e-07
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
I+IG L LNED + + FG+ NLV+D TG SKG+AF +Y D T A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 47.2 bits (107), Expect = 1e-06
Identities = 30/124 (24%), Positives = 56/124 (45%)
Frame = +2
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTV 271
+K FA+++F + D A+ G+++ I+ D+ P ++ A + S+
Sbjct: 164 NKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSK 223
Query: 272 VPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMT 451
S +F+G L + +KE GQ+R L+ TG KG+ F ++ DI
Sbjct: 224 KEPSSI-LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 452 DQAI 463
+A+
Sbjct: 283 MKAM 286
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 46.0 bits (104), Expect = 3e-06
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+++G +P + E+QV ++ G +++F LV D +G KGY F EY D + A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.5 bits (93), Expect = 6e-05
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
I + G+ E+QV++L FG ++ +L D TG KGYA EY + +A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +2
Query: 80 QINLDKNFAFLEFRSIDETTQAMAFDGIN-FKGQSLKIRRPHDYQPMPGTENPAINVPAG 256
Q K + +++F + + A+A +G G+ + + + P P P AG
Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN---PRPANPQPYAQQRAG 355
Query: 257 VISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYV 436
+ + +F+G L ED + G +++ L D +G KG+ + +
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 437 DISMTDQAI 463
DI + +
Sbjct: 416 DIDSAKKCV 424
Score = 29.1 bits (62), Expect = 0.35
Identities = 12/58 (20%), Positives = 28/58 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
+F+G L +++ + + +G + ++ D +G SKGY + ++ A+A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
K+F+GG+P E++ + FG++ L+ D TG +G+ F Y + S + ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Score = 39.5 bits (88), Expect = 2e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+FIGGL +D +++ FG++ +++DS+TG S+G+ F +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 2e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
D + + L + E+++++L FG ++ L KD TG +KG+AF Y D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.9 bits (84), Expect = 8e-04
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +2
Query: 209 QPMPGTENP-AINVPAGV---ISTVVPDSPHKIFIGGLPNYLNEDQVKELLMS-FGQLRA 373
+P+PGT + +N +G ++ S + IF+G L +NE V L S + ++
Sbjct: 156 KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKS 215
Query: 374 FNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
++ D T +S+GY F + D + A+A
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Score = 31.5 bits (68), Expect = 0.066
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Frame = +2
Query: 80 QINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI------RRPHDYQPMPGTENPA 238
Q N+ + + F+ F ++ A+A G + +++ + H + P+ P
Sbjct: 223 QTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVV--PV 280
Query: 239 INVPAGVISTVVP-----DSPHK-IFIGGLPNYLNEDQVKELLMSFGQL 367
P G S P D+ + +F+GGL +++E+++K L +FG++
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329
Score = 29.9 bits (64), Expect = 0.20
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
+++G L ++ E ++++ + G+ L+++ TG++ GY F E+
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
+++G LP+ E Q++ FG + + ++ TG SK YAF E+ + + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVAN 160
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 284 PHKIFIGGLPNYL--NEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
P +F+ L + + N Q++EL FG++++ L ST +SKGY F +
Sbjct: 418 PCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Score = 27.9 bits (59), Expect = 0.82
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLV---KDSSTGLSKG---YAFAEYVDISMTD 454
I++G LP+ + EL FG F+++ K+ ST SK +AF + + D
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD-SKSPTLFAFITFENKCSAD 80
Query: 455 QAIA 466
AIA
Sbjct: 81 NAIA 84
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 35.9 bits (79), Expect = 0.003
Identities = 30/133 (22%), Positives = 62/133 (46%)
Frame = +2
Query: 65 PVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAIN 244
P+ + I +KN AF+ F + + A AF F+ +LK + G + +
Sbjct: 139 PIESAWILPEKNCAFISFL---DPSHATAF----FQDAALKRLTIRGTEVKVGWGKNSAS 191
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
+ +++ + +F+G LPN + ED+++E L FG + +V + + AF
Sbjct: 192 NSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE------RNIAF 245
Query: 425 AEYVDISMTDQAI 463
+++I+ +A+
Sbjct: 246 VHFLNIAAAIKAV 258
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +2
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
+P+ + V + I+IG + L +++KE FG++ N ++ K AF
Sbjct: 400 LPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFRE------KNCAF 453
Query: 425 AEYVDISMTDQAI 463
+ ++ AI
Sbjct: 454 VNFTSLASAINAI 466
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.9 bits (79), Expect = 0.003
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+F+ G+ + + ED+++++ FG + ++++ T S+G+ F + + AI
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D+ +F+G L E+ + G + +V+D T L KG+A+ ++ D D+
Sbjct: 267 DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
Query: 458 AI 463
A+
Sbjct: 327 AL 328
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.007
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
+F+ L N L ++ + G +R +V+D +G SKG A+ E+ AIA
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Score = 32.3 bits (70), Expect = 0.038
Identities = 25/113 (22%), Positives = 47/113 (41%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTVV 274
K A++EF D A+A G G + ++ + E + A S +
Sbjct: 281 KGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAEL---ARAASAEI 337
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
P H++ + + L ++ VK + FG + +L +D SKG+ + +Y
Sbjct: 338 PF--HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQY 387
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 34.7 bits (76), Expect = 0.007
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
+F+G LP + + ++ GQ+ + + D ++G KGYAF E+++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFIN 142
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.009
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
++F+ L ED +K L FGQL ++ D T KG+A+ ++ D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.012
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +2
Query: 209 QPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 388
+P T P S P S +++G L + E + EL S G + + + +
Sbjct: 55 EPSESTSTPTNASSVATPSGTAPTSA-SLYVGELDPSVTEAMLFELFNSIGPVASIRVCR 113
Query: 389 DSSTGLSKGYAFAEYVDISMTDQAI 463
D+ T S GYA+ + ++ ++A+
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKAL 138
Score = 32.7 bits (71), Expect = 0.029
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
++I L + E + +L FG++ + +LVKD + +G+ F Y + +A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAV 318
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.012
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+F+G L ++E + + + GQL V G SKGY F Y D AI
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.7 bits (71), Expect = 0.029
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
+++G L Y E+Q+ L G++R + D T G+ F EY +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFE 82
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.066
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 314 NYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQA 460
N + +D+ EL+ S FG++ + +++D TG S YAF E+ + ++A
Sbjct: 252 NPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.066
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFA 427
++I GLP +++ + FG++ + + D T L KGY FA
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.1 bits (67), Expect = 0.088
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+++G + + ++++ S G + ++ D TG KG+A+ E+ + S+ A+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.27
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLN--EDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISM 448
P P +++ L + + + Q+++L FG + + L ++G+SKGY F + I
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 449 TDQA 460
+A
Sbjct: 438 AVRA 441
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.27
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
++F+G L N +N++ + + + L +V+D G ++G+ F + D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKD 79
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 0.62
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKG 415
P+ P ++F+ + + +Q++ SFG++ +L + TG S G
Sbjct: 90 PEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLG 136
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 0.82
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
+F+GGL + L+E ++ FG R N+ KG F +Y + S ++AI
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFG--RILNI----KIPFGKGCGFVQYSEKSAAEKAI 349
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 278 DSPHKIFIGGL-PNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
D IF+G L P + D + + ++ D TGLS+ Y F +
Sbjct: 179 DPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDI 442
+FIG LP+ +E +++E FG++ ++ K AF +++I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS------KKNIAFVHFLNI 344
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 110 GMQSFCLN*FDKRELGCRRLAPNRTDASVD 21
G +S LN FD RE+ C +AP A ++
Sbjct: 613 GYESIMLNEFDGREIPCSLMAPAPDTAPIE 642
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 337 NLIFIQIVWQ-TTNKYFVRRIWYYCTYDTSWNIYGRIFSARHGLI 206
N+ + VW T K + + C + +S+ +YG+ R+G +
Sbjct: 92 NVFVVFTVWAFTREKLYWTAFFSLCLFSSSFTMYGQSLRLRNGFV 136
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 PDSPHK-IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYV 436
P+ P + I + L + ++ + E+ +G + + + L+KGY + EYV
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYV 148
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 238 HKCSSWCHKYSSTR 279
HKCS CH S TR
Sbjct: 423 HKCSKTCHPISETR 436
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
+F+ L E ++ FG L LVKD +T S G F ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 4.4
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 197 PHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLM 352
P D+ + + A + P GV S++ +S +GGL NY+N Q+KE++M
Sbjct: 239 PPDFGRIREKSDLADSDPLGVDSSLSFES-----VGGLDNYIN--QLKEMVM 283
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 5.8
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 5 EVEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 184
E EF HL ++ G A + + F +FR D T AM + + F G L
Sbjct: 435 EDEFKRGPWHLGKFSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMNWTCVVFGGPML 494
Query: 185 KI 190
+
Sbjct: 495 MV 496
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 7.6
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 5 EVEFFNQQMHLSGLAQAAGNPVL-ACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 181
E E + + + L +AG+ + A + N D F LE + E D +F+
Sbjct: 774 EEEGYEDEYKIDDLDVSAGDFISPAYESNFDGLFDSLEHEA-SEVYVLSLLD--SFRSTC 830
Query: 182 LKIRRPHDYQPMPGTENP 235
++ QP+ GTENP
Sbjct: 831 SRVAELLQMQPLEGTENP 848
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 437 PHIQRKRNPCLILSMNL*P 381
P I +KR PC +L NL P
Sbjct: 3 PDISKKRLPCKVLVFNLPP 21
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 178 LSLKVDAIKSHSLCSFIYRSKFKECK 101
L VD + LCSF+ +S ++ C+
Sbjct: 195 LGRSVDLLFGGGLCSFLPKSTYRSCR 220
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 290 KIFIGGLPNYLN-EDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
K+F+ N +N ED E+L+S+ ++ ++ + KGY F
Sbjct: 382 KVFLTTRNNSINSEDSAHEVLLSYNRVLGSDIQGTILDRVKKGYQF 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,787
Number of Sequences: 5004
Number of extensions: 39164
Number of successful extensions: 156
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -