Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J11
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 170 5e-44
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 170 5e-44
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 149 1e-37
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 149 1e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 149 1e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 93 9e-21
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 2e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 42 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 1e-04
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 30 0.070
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 2.0
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 25 2.6
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 3.5
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 4.6
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 4.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 24 4.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 8.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 23 8.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 23 8.1
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 23 8.1
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 23 8.1
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 170 bits (413), Expect = 5e-44
Identities = 82/91 (90%), Positives = 87/91 (95%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLRGGAKKREKKSCSTPKKI 310
IQKESTLHLVLRLRGG KKR+KK+ +TPKKI
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKI 91
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 170 bits (413), Expect = 5e-44
Identities = 82/91 (90%), Positives = 87/91 (95%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLRGGAKKREKKSCSTPKKI 310
IQKESTLHLVLRLRGG KKR+KK+ +TPKKI
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKI 91
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 149 bits (361), Expect = 1e-37
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFVKTLTGKTITLEVE SDTI+NV +KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 218 IQKESTLHLVLRLRGG 265
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 93.1 bits (221), Expect = 9e-21
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
M I VKTLTGK I L+++P+D + + ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 218 IQKESTLHLVLRLRGGA 268
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 42.3 bits (95), Expect = 2e-05
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 38 MQIFVKTLTGKTITLEVEPSDT-IENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 214
M + K L + + +DT I + KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 215 NIQKESTLHLVLRLRGGAKKREKKSCSTPK 304
NI+++ + ++ R K S STPK
Sbjct: 61 NIKEQDFIVCMV-------SRPKTSTSTPK 83
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 41.5 bits (93), Expect = 3e-05
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 65 GKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 238
GK LE+EP++T + ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.5 bits (88), Expect = 1e-04
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 32 STMQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
+ + + +K + + V+ ++ + I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 212 YNIQKESTLHLVLRL 256
Y IQ ++HLV L
Sbjct: 62 YKIQDGHSIHLVKTL 76
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.3 bits (65), Expect = 0.070
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 197 DHLPTVYRRRSIFVDQEGCPPY 132
DHLP+V RRRSI D G P Y
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDY 632
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 191 DGRTLSDYNIQKESTLHLVLRLRGGAKK 274
DG TL++ N HL++RL+ ++K
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQK 459
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 2.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 8 GTRVGVR*STMQIFVKTLTGKTITLEV-EP--SDTIENVMAKIQDKEGIPPDQQRLIFAG 178
G+RV V+ F+K + K TL+V +P DT + Q E I + I G
Sbjct: 307 GSRVYVQEDVYDEFIKRMVAKAKTLKVGDPFAEDTFQGAQVSKQQYERIVSYIESGIAHG 366
Query: 179 KQLEDG 196
+LE G
Sbjct: 367 AKLEIG 372
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 3.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 227 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 132
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 107 ENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 226
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.2 bits (50), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 70 LPRKGFHKNLHR*LPYADP 14
LP+KG+ K LH + + DP
Sbjct: 63 LPKKGYEKALHSFIIHEDP 81
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.2 bits (50), Expect = 4.6
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 32 STMQIFVKTLTGKTITLEVEPSDTIENVMAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
S +I V T+ K +V + T+ + I P D+ +LI AG+ L + L +
Sbjct: 2 SEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
Query: 212 --YNIQKESTLHLVL 250
++ T HLV+
Sbjct: 62 ILHDATDLVTFHLVI 76
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 19 RRKVINDADFCENP 60
RR V+N CENP
Sbjct: 49 RRAVLNQTSLCENP 62
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 288 LFFSRFLAPPRRRSTKWSVDSFWIL 214
LFF+ F + R T +++D W+L
Sbjct: 333 LFFTIFTNAYKLRQTNFTLDFLWVL 357
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 23.4 bits (48), Expect = 8.1
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 122 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK--ESTLHLVLRLRGGAKKREKKSCS 295
K D + +P + RL + + R+ +Q E+ +HLV + G K K+C
Sbjct: 260 KSNDNQSVPFEYLRLPSWAHREDKKRSSKPQPLQPDPETVIHLVPTVLAGDKSSVVKTCC 319
Query: 296 T 298
T
Sbjct: 320 T 320
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 155 DQEGCPPYLESWPSHFR 105
DQEG P YLES H R
Sbjct: 159 DQEGLPIYLESSHLHNR 175
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 FVKTLTGKTITLEVEPSDTIE--NVMAKIQDKEG 142
F LT T T+E EP+ TI+ + A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,244,310
Number of Sequences: 5004
Number of extensions: 23961
Number of successful extensions: 75
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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