Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J09
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   0.59 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   0.78 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   2.4  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    23   7.2  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    23   7.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   9.6  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    23   9.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.6  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 0.59
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 122 NSLNIAKYEPSIISNNKVDDTG 57
           N  ++AK+E  I+   ++DDTG
Sbjct: 309 NEFDVAKFEKHIVETIQIDDTG 330


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 28  SNSNKTVPRIPVSSTLLLEMIEGSYFAMFNEFYTLAHQAIIDIDERAQYELYADVMLVTS 207
           SN N T    P   T +LE+I+ + F + +    L  Q+++  +      LYA +    +
Sbjct: 145 SNPNATSSS-PPPLTPILELIKQNNFCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNN 203

Query: 208 AVMNSLENNSSGQPNDGPM 264
           ++ +S+      Q   GP+
Sbjct: 204 SLDSSIRKIIRMQSFRGPL 222


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 133 AHQAIIDIDERAQYELYA 186
           AHQA+ DI+ER +  ++A
Sbjct: 166 AHQALSDIEERKKQHMFA 183


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 169 QYELYADVMLVTSAVMNSLE 228
           Q  ++ DV+L   A+MNSLE
Sbjct: 612 QSVVHEDVLLAIGAMMNSLE 631


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 103 SMNPQSFLTIKSMIPVSGEQ 44
           SMN  +FLTI S   ++GE+
Sbjct: 423 SMNRNAFLTINSQPALNGEK 442


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 246 LPG*VIFQ*IHHGTSDEHYVGVKF 175
           LPG V+F  +H G    +Y+  K+
Sbjct: 79  LPGEVVFDEVHFGKFASYYLQGKY 102


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  SSTLLLEMIEGSYFAMFNEFYT 129
           SST LLE ++  YF + +  YT
Sbjct: 154 SSTNLLETLQEKYFGVEDVLYT 175


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 148 IDIDERA-QYELYADVMLVTSAVMNSLENN 234
           +DI E A Q+E+  ++ +V S + +++ENN
Sbjct: 116 VDILEVARQFEMRINLDIVDSMIASAIENN 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,275
Number of Sequences: 5004
Number of extensions: 18655
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)