Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J09
         (268 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0938 - 7936834-7937111,7937989-7938076                           26   3.6  
05_05_0258 - 23656473-23657828                                         26   3.6  
05_07_0068 - 27469929-27471050                                         26   4.8  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    25   6.3  
01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626     25   6.3  

>07_01_0938 - 7936834-7937111,7937989-7938076
          Length = 121

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 251 FGCPDELFSNEFITALVTSIT 189
           FG P + F N+FIT L  S+T
Sbjct: 84  FGDPSKHFENQFITVLKRSLT 104


>05_05_0258 - 23656473-23657828
          Length = 451

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 159 RESTV*TLRRRNARH*CRD 215
           RES V T RRR  R+ CRD
Sbjct: 397 RESAVFTARRRRRRYPCRD 415


>05_07_0068 - 27469929-27471050
          Length = 373

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 67  STLLLEMIEGSYFAMFNEFYTLAHQAIIDIDERAQYELYADVMLVTSAVMNSLENNSSGQ 246
           ST LL +   S        +TL    +I         L A V+L  S+V+ +L +  SG+
Sbjct: 100 STSLLPVSTSSLLLSTQLAFTLVLAVVIVRHPVTFVNLNAVVLLTLSSVLLALRSGDSGE 159

Query: 247 PNDGPMG 267
             +G +G
Sbjct: 160 TAEGGVG 166


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 1   ARGRKADQVSNSNKTVPRIPVSSTLLLEMIEGSYFA 108
           A+GR +D +    K V  +P ++ LLL+  EG Y A
Sbjct: 432 AKGRTSDAIK---KLVELVPATALLLLKDKEGKYAA 464


>01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626
          Length = 350

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 171 LCSLVYVNNSLMGKRVELIEHRKV*TLNH 85
           L +L+  NN L GK  E ++H +  TL H
Sbjct: 104 LSALILYNNDLSGKFPEFLQHCQELTLLH 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,241,561
Number of Sequences: 37544
Number of extensions: 116938
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)