Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J07
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 1.2
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 1.5
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 25 2.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 3.6
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 3.6
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 3.6
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.3
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 24 6.3
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 24 6.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 8.3
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 23 8.3
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 23 8.3
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 1.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 83 DWMGAVRDPQDPTNWKWVNGNDISVSFWNA 172
+W V +P DP + W + + + WNA
Sbjct: 350 NWEVKVFEPSDPICFPWKKASHMPLEHWNA 379
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 65 SDSSSQDWMGAVRDPQDPTNWKWVN-GNDISVSFWN 169
+D DW+ VR +P N +V+ G D +V W+
Sbjct: 143 TDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWD 178
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 2.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 274 LVLTHIVHSRLTVCVSPELAKNSVEASAVLSTTWSVPERHTDVIAVHPLPVGRI-LWIPD 98
+V H + S T SP++ K +E + +W+ P R +V PV + +PD
Sbjct: 187 VVRLHTLQSLRTDKGSPKIEKPDIENVVIQQRSWTSPIRWQLWGSVPSTPVNTVRKTLPD 246
Query: 97 G 95
G
Sbjct: 247 G 247
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 227 PRASQKFRRSE--RSSLHHLERSRKTH*CHC 141
P S+KF+RSE R + L S K C C
Sbjct: 426 PECSKKFKRSEHLRRHIRSLHTSEKPFVCIC 456
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 3.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +2
Query: 2 GTRSKPALQGFISWELWRRHRSDSSSQDWMG 94
G + GF+SW W +D + D +G
Sbjct: 170 GALEESVADGFLSWNAWPTTDADMNDNDDIG 200
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S T T
Sbjct: 480 SGTVEVVEPTAGTITETIVSGSKTFT 505
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S T T
Sbjct: 690 SGTVEVVEPTAGTITETIVSGSKTFT 715
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 235 SGTVEVVEPTAGTITETIVSGSVGYT 260
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 270 SGTVEVVEPTAGTITETIVSGSVGYT 295
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 305 SGTVEVVEPTAGTITETIVSGSVGYT 330
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 340 SGTVEVVEPTAGTVTETIVSGSVGYT 365
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 445 SGTVEVVEPTAGTITETIVSGSVGYT 470
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 550 SGTVEVVEPTAGTITETIVSGSVGYT 575
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 585 SGTVEVVEPTAGTVTETIVSGSVGYT 610
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 620 SGTVEVVEPTAGTVTETIVSGSVGYT 645
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 725 SGTVEVVEPTAGTITETIVSGSVGYT 750
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 1040 SGTVEVVEPTAGTVTETIVSGSIPFT 1065
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 830 SGTVEVVEPTAGTVTETIISGSVGYT 855
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 865 SGTVEVVEPTAGTVTETIISGSVGYT 890
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 935 SGTVEVVEPTAGTVTETIISGSVGYT 960
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT++VVE TA TE + S + T
Sbjct: 1005 SGTVEVVEPTAGTVTETIISGSVGYT 1030
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 6.3
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -3
Query: 229 SPELAKNSVEASAVLSTTWSVPERHTDVIAVHPLPVGRILWIPDGTHP--ILTATVASVS 56
+PE N+ + L +W++ R V HP+ L+ T+ +L ++ +
Sbjct: 440 APETRNNNSQTDHQLPRSWAIYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIE 499
Query: 55 SP*FPADESLQ--GGLAP 8
P + + L+ GG+ P
Sbjct: 500 KPPVASQKDLEKAGGVFP 517
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 501 VSGTVEVVEPTAGVVTETVVSGSVGYT 527
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 536 VSGTVEVVEPTAGVVTETVVSGSVGYT 562
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 571 VSGTVEVVEPTAGVVTETVVSGSVGYT 597
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 606 VSGTVEVVEPTAGVVTETVVSGSVGYT 632
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 641 VSGTVEVVEPTAGVVTETVVSGSVGYT 667
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 676 VSGTVEVVEPTAGVVTETVVSGSVGYT 702
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 711 VSGTVEVVEPTAGVVTETVVSGSVGYT 737
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 159 LSGTLQVVERTALASTEFLASSGLTQT 239
+SGT++VVE TA TE + S + T
Sbjct: 746 VSGTVEVVEPTAGVVTETVVSGSVGYT 772
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 131 WVNGNDISVSFWNAPGGGENCARFDGIFG*LWADT 235
W N N + ++W+A G A F G L ADT
Sbjct: 521 WSNTNYDTYAYWHATNGQTGIASFS--MGSLTADT 553
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT+++VE TA TE + S L T
Sbjct: 114 SGTVEIVEPTAGTVTETITSGTLPFT 139
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 17 PALQGFISWELWRRHRSDSSSQDWMGAVRDPQDPTNWKWVN 139
PA+ GF++ L +R + A P + W+W++
Sbjct: 137 PAIFGFVAVILGLSYRRMDTKYPLGAAPLRPSQSSKWQWIS 177
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 162 SGTLQVVERTALASTEFLASSGLTQT 239
SGT+++VE TA TE + S L T
Sbjct: 114 SGTVEIVEPTAGTVTETITSGTLPFT 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,039
Number of Sequences: 5004
Number of extensions: 28946
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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