Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J07
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 29 0.77
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 29 1.0
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 29 1.0
10_01_0056 + 795258-796211 28 1.3
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225... 28 1.3
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 28 1.8
02_03_0335 + 17882461-17882527,17882616-17884723 28 1.8
01_05_0766 - 25026487-25027224 28 1.8
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 2.3
01_06_0384 + 28906632-28907333 27 2.3
01_05_0055 + 17687991-17688063,17688612-17688671,17689500-17689786 27 2.3
04_03_0093 - 11085882-11087339 27 3.1
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 27 4.1
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 27 4.1
08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311 27 4.1
02_05_1167 - 34638709-34639104,34640653-34642158 27 4.1
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 26 5.4
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 26 5.4
02_05_0465 + 29271718-29271790,29272344-29272483 26 5.4
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 26 5.4
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 26 5.4
01_05_0196 + 19132110-19132163,19133483-19133625,19134256-191343... 26 5.4
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 26 5.4
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363... 26 5.4
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 26 7.1
01_06_0746 - 31636024-31641396 26 7.1
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 25 9.4
12_01_0124 - 943773-944474 25 9.4
07_01_0534 - 3949551-3950350,3950997-3951006 25 9.4
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 25 9.4
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 200 SERSSLHHLERSRKTH*CHCRSPTSSWSDPVDP*RHPSNLD 78
++R++LH R +TH CH S + PVDP NLD
Sbjct: 33 NKRTALHFAAREGRTHVCHFL--ISDLALPVDPKDDDGNLD 71
>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 7 EEQARLARIHQLGTMEKTPKRQ*QSRLDGCRQGST 111
+EQA AR+ + EK K+Q Q + G ++GST
Sbjct: 1274 QEQAEAARLEKEREREKRAKQQQQVSMPGLKKGST 1308
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +2
Query: 38 SWELWRRHRSDSSSQDWMGAV-RDPQ-----DPTNWKWVNGNDI 151
++E WRRHRSD + + AV P PT WK V D+
Sbjct: 111 AYEDWRRHRSDRAENGRLAAVLLSPGAGTHFAPTKWKHVRVGDV 154
>10_01_0056 + 795258-796211
Length = 317
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +2
Query: 32 FISWELWRRHRSDSSSQDWMGAVRDPQDPTNWKWVNGNDISVSFWNAPGGGENCARFDGI 211
++ W + R +DSS + + P + V+ N V+ N PG NC+ +G
Sbjct: 241 WLDWAIRDRRGNDSSVASCPAPEVEKKKPAGYACVSANSECVNSTNGPGYYCNCS--NGY 298
Query: 212 FG*LWADTDCQARMNYMC 265
G + + CQ + C
Sbjct: 299 EGNPYDNDGCQGKNVCSC 316
>08_02_1230 +
25419533-25420446,25421098-25421279,25422197-25422543,
25423327-25423557,25423680-25423775,25423934-25424044
Length = 626
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 201 KRAQFSPPPGAFQKDTLMSLPFTHFQLVGS 112
+RA PPPG Q + LP H L+ S
Sbjct: 5 RRAPLPPPPGRVQAGDALPLPIRHTNLIFS 34
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 216 PKIPSKRAQFSPPPGAFQKDTLMSLPFTHFQLVGSCGSLTAPI 88
P P ++A+FSPPP + T F L TAP+
Sbjct: 278 PYTPGQQAKFSPPPALYASPTPSPPTFAGGYLQSRLSGETAPM 320
>02_03_0335 + 17882461-17882527,17882616-17884723
Length = 724
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 109 WIPDGTHPILTATVASVSSP*FPADESLQGG 17
W PD + P A + S SS +PA++++ G
Sbjct: 152 WGPDESMPFSVACIHSTSSKFYPAEKAISSG 182
>01_05_0766 - 25026487-25027224
Length = 245
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 266 DTYSSFSLDSLCQPRASQKFRRSERSSLHHLERSRKTH 153
D + S SLDS PR+ + S +SS+ H TH
Sbjct: 158 DCFESDSLDSSSPPRSRKMHHSSSQSSVFHGSMDTVTH 195
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -3
Query: 268 LTHIVHSRLTVCVSPELAK--NSVEASAV-LSTTWSVPERHTDVIAVHPLPVGRILWIPD 98
+ ++H R+T+ AK + EA V L + RH + A++P+ ++ + D
Sbjct: 1646 IASLIHRRITISAHVRFAKMLSGTEAFCVYLRLLGAKIGRHCSIRAINPVANPELISVGD 1705
Query: 97 GTH 89
G H
Sbjct: 1706 GVH 1708
>01_06_0384 + 28906632-28907333
Length = 233
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 56 RHRSDSSSQDWMGAVRDPQDPT-NWKWVNGNDISVSFW 166
+H+ + SQ W G + + + +WV GN S+SFW
Sbjct: 54 QHKGGNVSQFWRGLLNIKRWMSFGSEWVLGNGESISFW 91
>01_05_0055 + 17687991-17688063,17688612-17688671,17689500-17689786
Length = 139
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 38 SWELWRRHRSDSSSQDWMGAVRDPQDPTNW-KWVNGNDISVSF 163
S + W HR ++ + A DP DP W + N VS+
Sbjct: 12 SMKFWAAHRVTNNDHEEEDAYGDPVDPLEWDDYARRNGTHVSY 54
>04_03_0093 - 11085882-11087339
Length = 485
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 204 SKRAQFSP-PPGAFQKDTLMSLPFTHFQLVGSCGSLTAP 91
S R F+ PP F+ DTL L T+FQL G ++ P
Sbjct: 136 SMRGSFTATPPHIFRCDTLRRLRLTNFQLDVPEGGVSMP 174
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 26.6 bits (56), Expect = 4.1
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 92 GAVRDPQDPTNWKWVNGNDISVSFWNAPGGGENCARFDGIFG*LWADTDCQARMNYMCQH 271
GAV P P+ WV +W +P GG + DG G + AD +YM ++
Sbjct: 322 GAVAPPS-PSTISWVAPQSSPTGWWPSPNGGP--VQHDGYLG-MAADP-----TSYMLEN 372
Query: 272 -QPNACGTPE--QPPNS 313
P A PE PP S
Sbjct: 373 LLPTAAIPPEPMMPPTS 389
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 50 WRRHRSDSSSQDWMGAV-RDPQDP 118
WR H + S W+G V RD + P
Sbjct: 664 WRNHAAGGSESHWLGVVARDEEGP 687
>08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311
Length = 302
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 23 LQGFISWELWRRHRSDSSSQDWMGAVR--DPQDPTNWKWVNGNDISVSF 163
++GF W+RHR D+ AVR D + W V G+D + F
Sbjct: 86 MRGFACLPYWQRHRRDTVRAMAREAVRRSDGRCEEFWSKVGGDDEVLQF 134
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +2
Query: 26 QGFISWELWRR-----HRSDSS-SQDWMGAVRDPQDPTNWKWVNGND 148
+G SW W R SDS S++W V Q P+++ WV+ N+
Sbjct: 548 EGSGSWYSWVRGGRGAQSSDSGDSRNWKDEVDPFQIPSDYTWVDANE 594
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 216 PKIPSKRAQFSPPPGAFQKDTLMSLP 139
PK +KRA+ SPPP + + L+ P
Sbjct: 304 PKTTAKRAKPSPPPSDYVRRRLLEPP 329
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 89 MGAVRDPQDPTNWKW---VNGN---DISVSFWNAPGGG 184
+G+V +P +PT W+W + G+ IS ++W GG
Sbjct: 531 LGSVGEPINPTAWRWFYDIIGDARCPISDTWWQTETGG 568
>02_05_0465 + 29271718-29271790,29272344-29272483
Length = 70
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 44 ELWRRHRSDSSSQDWMGAVRDPQDPTNW 127
+ W HR ++ + A DP DP W
Sbjct: 14 KFWAAHRVTNNDHEEEDACEDPVDPLEW 41
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 214 KNSVEASAVLSTTWSVPERHT-DVIAVHPL 128
K S E VL+ WS+ E+HT D+ A++ L
Sbjct: 239 KTSTELLKVLNRIWSLEEQHTADMSAINGL 268
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 278 SAGVDTYSSFSLDSLCQPRASQKFRRSERSSLHHLERSRKT 156
S GV S +D L + A+ K SER+ HHL+ ++
Sbjct: 228 SEGVQNLISKDMDELLKIYAADKRFASERTPQHHLKEEAES 268
>01_05_0196 +
19132110-19132163,19133483-19133625,19134256-19134385,
19135123-19135314,19135594-19135806
Length = 243
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 83 DWMGAVRDPQDPTNWKWVNGN 145
DW GAV+D Q W NG+
Sbjct: 87 DWPGAVKDIQASVKWLKANGS 107
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 ARGASPPCKDSSAGNYGEDTEAT-VAVKIGWVPSGIHRIRP 122
ARGASP S YG T AT A VP+ +HR P
Sbjct: 88 ARGASPLQVPSLVRRYGSTTGATATATPAAGVPA-LHRASP 127
>01_01_0492 -
3632812-3633189,3633563-3633709,3633906-3633995,
3634278-3634331,3636434-3636598,3637252-3637488,
3637610-3637696,3637846-3638022
Length = 444
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 305 EVVPVYRTRSAGVDTYSSFSLDSLCQPRASQKFRRSERSSLH 180
+ VPV RTR V SS + QPRA+ RR S H
Sbjct: 125 KTVPVRRTRRRDVLRSSSAVRFGMKQPRAAGVVRRDSTSDGH 166
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 274 LVLTHIVHSRLTVCVSP 224
L+L HIV S +++C+SP
Sbjct: 206 LILGHIVESPISICMSP 222
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 35 ISWELWRRHRSDSSSQDWMGAVRDPQDPTNWKWVNGNDIS 154
+SW + + S DW+ V D D NW W G+ S
Sbjct: 1540 VSW-IMAPFAFNPSGFDWLKTVYDFDDFMNWIWYPGSIFS 1578
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 82 LTATVASVSSP*-FPADESLQGGLAP 8
+ A AS+SSP P ESL+GG+ P
Sbjct: 222 VAAPTASISSPVGAPQSESLKGGMRP 247
>12_01_0124 - 943773-944474
Length = 233
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 301 LFRCTARVRLVLTHIVHSRLTVCVSPELA--KNSVEASAVLSTTWSV 167
LF RVR TH+V +RLT +SP L+ SV+ + L T +V
Sbjct: 68 LFLTVLRVRDPTTHLVSTRLT-GLSPRLSFPATSVQLNVTLLITVAV 113
>07_01_0534 - 3949551-3950350,3950997-3951006
Length = 269
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 3 ARGASPPCKDSSAGNYGEDTEATVAVKIGWVPSGIHRI 116
A A PP SAG+ G + AT AV +G G+ RI
Sbjct: 111 ATAAVPPDPRLSAGSGGWEQSATAAVAVG--DGGLGRI 146
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 214 KNSVEASAVLSTTWSVPERH-TDVIAVHPL 128
K S E VL+ WS+ E+H DV+A+ L
Sbjct: 223 KTSTELLKVLNRIWSLEEQHAADVLAMKGL 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,550
Number of Sequences: 37544
Number of extensions: 226490
Number of successful extensions: 693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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