Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J07
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   2.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 19  RLARIHQLGTMEKTPKRQ*QSRLD 90
           R+ R+ ++ TM++T K     R+D
Sbjct: 446 RMDRVDRMDTMDRTDKMSSMDRMD 469



 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 19  RLARIHQLGTMEKTPKRQ*QSRLD 90
           R+ R+ ++ TM++T K     R+D
Sbjct: 494 RMDRMDRMDTMDRTDKMSRIDRMD 517


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 78  VKIGWVPSGIHRIRPTGSG*TAMTSVCLSGTLQVVERTALASTEF 212
           V + WV   IHR   +      +T+V    T+ +  RT L    +
Sbjct: 259 VVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRY 303


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 119 SDPVDP*RHPSNLDCYCR 66
           S+PV+P R  +N   +C+
Sbjct: 335 SEPVEPPRRKNNCPLHCK 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 107 PQDPTNWKWVNGNDISVSFWN 169
           P+ P N    N ND+    WN
Sbjct: 365 PKFPRNIDEYNNNDLDTKKWN 385


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 266  QHQPNACGTPEQPPN 310
            + Q  A G PEQPP+
Sbjct: 1072 RRQHTAEGVPEQPPH 1086


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 274 LVLTHIVHSRLTVCVSPELAK 212
           ++L HIV + + +C+  E AK
Sbjct: 1   MLLYHIVGASVLICLLNETAK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,836
Number of Sequences: 438
Number of extensions: 1884
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)