Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J06
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    24   2.6  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    23   5.9  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    23   5.9  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    23   7.8  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    23   7.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    23   7.8  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    23   7.8  

>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 138 VTSGTELSSAQCEWCSSLLHLCLTL 212
           V S   L + Q +W S +LH C +L
Sbjct: 87  VDSPDSLDNVQEKWISEVLHFCSSL 111


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 129 SLSPYRAQISNSGMILSRKTQYHFTR 52
           S+ P      N+G++L R ++ HF R
Sbjct: 253 SIPPEDTPYFNAGLMLIRPSELHFNR 278


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 143 IWDGTKLGAMRVV*FATSPLSNPSGITGVSICMY 244
           IW G  +GA+ V+       S+P  I G  +  Y
Sbjct: 118 IWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTY 151


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 138 VTSGTELSSAQCEWCSSLLHLCLTL 212
           V +   L + Q +W S +LH C  L
Sbjct: 87  VDAPESLDNVQEKWISEVLHFCSNL 111


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 117 MATGSPPVTSGTELSSAQCEWCSSL 191
           MA+G+PP    T +     EW  S+
Sbjct: 1   MASGAPPSVDLTSIQWRMPEWVQSM 25


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 34  SGSIPGSGKVILGFSTQYH 90
           SG  P  GK++ GF   YH
Sbjct: 68  SGPEPVYGKIVSGFKKFYH 86


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 183 YTTRIAPSLVPSQM*QGASLSPYRAQISNSGMILS 79
           Y  + AP+ VPS + +    +  +AQ+  SG +LS
Sbjct: 27  YAEKAAPTEVPSILEERIRGAYNQAQMMESGRVLS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,201
Number of Sequences: 5004
Number of extensions: 20335
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)