Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J06
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0355 + 16922863-16924224 29 0.69
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164... 27 1.6
08_01_0015 - 103399-104001 27 2.8
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 26 3.7
03_05_1048 - 29950860-29951396,29951810-29952676 26 3.7
02_03_0346 + 17981337-17981720,17981811-17982185 26 4.8
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 25 6.4
03_05_0372 - 23580742-23580936,23581004-23581051 25 6.4
12_02_0983 - 25035854-25035976,25036675-25036986 25 8.5
11_01_0523 - 4109070-4109984,4110532-4110936 25 8.5
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 25 8.5
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 25 8.5
06_03_1181 - 28227746-28229115,28229130-28229307 25 8.5
06_01_1098 - 9017236-9018660 25 8.5
05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410 25 8.5
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 25 8.5
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580... 25 8.5
02_02_0146 - 7171656-7172044,7172383-7175008 25 8.5
>09_04_0355 + 16922863-16924224
Length = 453
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Frame = +3
Query: 87 SSRSLKFVPDMATGSPP------VTSGTELSSAQCEWCSSLL 194
+S L++V D+A G+PP + +G++L QC+ C++ L
Sbjct: 92 ASGDLEYVLDLAVGTPPQPITALLDTGSDLIWTQCDTCTACL 133
>10_01_0136 -
1639780-1639901,1640038-1640093,1641958-1642061,
1642119-1642301,1642963-1643073,1643175-1643330,
1644627-1644866,1646496-1646603,1646764-1647903
Length = 739
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 99 LKFVPDMATGSPPVTSGTELSSAQCEWCSSLL 194
L+ +P +A +P GT+L S WC S L
Sbjct: 655 LRAMPHLALTNPNEKRGTQLGSTVFTWCGSRL 686
>08_01_0015 - 103399-104001
Length = 200
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 235 YAHACYPRRVRQR*SSELHHSHCAELSSVPDVTGGEPVAIS 113
+A +PRR +R L HS L + G PVA +
Sbjct: 73 FARVGFPRRQEERLRRALEHSEVVWLEDSASSSAGRPVAFA 113
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 168 APSLVPSQM*QGASLSPYRA-QISNSGMILSRK 73
AP+ VP Q GA+ P+R+ QI+ +G +K
Sbjct: 6 APTAVPPQDASGAATEPFRSLQIATAGAAAKKK 38
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 210 GLDRGEVANYTTRIAPSLVPSQM*QGASLSPYRAQISNSGMILSR 76
G EVANY R+ S + + YRA N G ++S+
Sbjct: 412 GRSSHEVANYIQRLIASTLSYECTSFTRKDKYRALAGNDGTVVSK 456
>02_03_0346 + 17981337-17981720,17981811-17982185
Length = 252
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 66 IGFFYSVSSRSLKFVPDMATGSPPVTS---GTELSSAQCEWCSSLL 194
IG S+ S+ PD + + S GTE S+A EW SLL
Sbjct: 104 IGVLLSLQSKDPDACPDQLIRALCIGSLQAGTETSAAVVEWAMSLL 149
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 117 YRAQISNSGMILSRKTQYHFTRPGD 43
YRA++ +++ +Y F RPG+
Sbjct: 44 YRAELRRQNALINNGPRYRFRRPGE 68
>03_05_0372 - 23580742-23580936,23581004-23581051
Length = 80
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 35 RVQSPGRVK*YWVFLLSIIPEFEIC 109
R++ G V W+ LL + P + IC
Sbjct: 16 RIEGDGEVLQLWIDLLDLAPTYAIC 40
>12_02_0983 - 25035854-25035976,25036675-25036986
Length = 144
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 95 EFEICARYGDRLAPCHIWD 151
EF + AR LAP H+WD
Sbjct: 28 EFSVQARRLAELAPRHVWD 46
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 157 SSVPDVTGGEPVAIS----GTNFKLRDDTE*KNPISLYPTRGLNPRPQNGS 17
++V D+ G AI+ G +L DD ++ I G+ RP NGS
Sbjct: 303 AAVEDIVSGTLAAIAARIKGVIGRLNDDEMLRSAIDYNEMAGMPDRPDNGS 353
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 80 VEKPNITLPDPGIE 39
++KPNI LP PG E
Sbjct: 546 IDKPNIALPPPGWE 559
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 225 PVIPEGLDRGEVANYTTRIAPSLVP 151
P++ D GEVA++TTR + ++ P
Sbjct: 84 PMLLWSRDTGEVASFTTRFSFNITP 108
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -1
Query: 225 PVIPEGLDRGEVANYTTRIAPSLVPSQ----M*QGASLSPY-RAQISNSGMILSRKTQYH 61
P++ + + ++ T +A +L+PSQ + S P+ Q N + +TQ H
Sbjct: 109 PILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHISFQPHIPIQTQNPNQVQYPQTQLH 168
Query: 60 FTRP 49
T P
Sbjct: 169 QTHP 172
>06_01_1098 - 9017236-9018660
Length = 474
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 56 PDPGIEPETSERQSYESS 3
PDP EPE S R+ Y S
Sbjct: 12 PDPVSEPEESSREDYAQS 29
>05_06_0129 -
25856981-25857568,25857652-25858058,25858227-25858410
Length = 392
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 56 PDPGIEPETSERQSYESS 3
PDP EPE S R+ Y S
Sbjct: 14 PDPVSEPEESSREDYAQS 31
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 99 LKFVPDMATGSPPVTSGTELSSAQCE 176
+ F P + GSP TS + S A+CE
Sbjct: 1 MDFNPFLREGSPSETSSSLTSEAECE 26
>02_05_0078 -
25656695-25656888,25656941-25657127,25657765-25658067,
25658152-25658296,25658376-25658613,25658694-25658904,
25659060-25659175,25659420-25659468
Length = 480
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 137 RGRACRHIGHKF 102
+GRACRH G +F
Sbjct: 448 KGRACRHAGERF 459
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 114 DMATGSPPVTSGTELSSAQCEWCS 185
++ATG P GTE S +W S
Sbjct: 898 ELATGRGPQDGGTESGSCLAKWAS 921
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,582,342
Number of Sequences: 37544
Number of extensions: 146765
Number of successful extensions: 376
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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