Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J06
         (249 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538021-1|CAD97967.1|  784|Homo sapiens hypothetical protein pr...    28   6.3  
BC044577-1|AAH44577.1| 1124|Homo sapiens microtubule associated ...    28   6.3  
AB110786-1|BAD83657.1|  955|Homo sapiens flavoprotein oxidoreduc...    28   6.3  
AB110785-1|BAD83656.1|  976|Homo sapiens flavoprotein oxidoreduc...    28   6.3  
AB018293-1|BAA34470.2| 1125|Homo sapiens KIAA0750 protein protein.     28   6.3  

>BX538021-1|CAD97967.1|  784|Homo sapiens hypothetical protein
           protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  SVSSRSLKF-VPDMATGSPPVTSGTELSSAQ 170
           +V +  L F V +   G PPVT+G E++SAQ
Sbjct: 402 AVENNQLAFDVAEREFGIPPVTTGKEMASAQ 432


>BC044577-1|AAH44577.1| 1124|Homo sapiens microtubule associated
           monoxygenase, calponin and LIM domain containing 2
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  SVSSRSLKF-VPDMATGSPPVTSGTELSSAQ 170
           +V +  L F V +   G PPVT+G E++SAQ
Sbjct: 573 AVENNQLAFDVAEREFGIPPVTTGKEMASAQ 603


>AB110786-1|BAD83657.1|  955|Homo sapiens flavoprotein
           oxidoreductase protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  SVSSRSLKF-VPDMATGSPPVTSGTELSSAQ 170
           +V +  L F V +   G PPVT+G E++SAQ
Sbjct: 573 AVENNQLAFDVAEREFGIPPVTTGKEMASAQ 603


>AB110785-1|BAD83656.1|  976|Homo sapiens flavoprotein
           oxidoreductase protein.
          Length = 976

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  SVSSRSLKF-VPDMATGSPPVTSGTELSSAQ 170
           +V +  L F V +   G PPVT+G E++SAQ
Sbjct: 573 AVENNQLAFDVAEREFGIPPVTTGKEMASAQ 603


>AB018293-1|BAA34470.2| 1125|Homo sapiens KIAA0750 protein protein.
          Length = 1125

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  SVSSRSLKF-VPDMATGSPPVTSGTELSSAQ 170
           +V +  L F V +   G PPVT+G E++SAQ
Sbjct: 574 AVENNQLAFDVAEREFGIPPVTTGKEMASAQ 604


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,398,412
Number of Sequences: 237096
Number of extensions: 875718
Number of successful extensions: 1705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)