Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J06
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    26   3.1  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    26   3.1  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    26   3.1  
Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    25   7.1  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 133 PLSHLGRN*ARRNASGVVRYFTSV*PFGDNRREHM 237
           P   +GRN AR+NA+  V+  TS+    D   EH+
Sbjct: 703 PTIPIGRNTARKNAAKKVKIDTSIVVQSDEDMEHV 737


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 130 EPVAISGTNFKLRDDTE*KNPISLYPTRGLNPRPQNGSRMNPR 2
           EP A S T   + +      P    PTR L P P + S   PR
Sbjct: 309 EPPATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSAAPPR 351


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 130 EPVAISGTNFKLRDDTE*KNPISLYPTRGLNPRPQNGSRMNPR 2
           EP A S T   + +      P    PTR L P P + S   PR
Sbjct: 309 EPPATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSAAPPR 351


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 130 EPVAISGTNFKLRDDTE*KNPISLYPTRGLNPRPQNGSRMNPR 2
           EP A S T   + +      P    PTR L P P + S   PR
Sbjct: 382 EPPATSPTTSAVTNGHGNHGPAPAVPTRRLPPHPSSSSAAPPR 424


>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 78  YSVSSRSLKFVPDMATGSPPVTSGTELSSAQCEWCSSLLHLCLTLR 215
           Y  S  +   V  +   S P+T GTEL  + C    SL+++ L ++
Sbjct: 524 YLTSETNKSCVIKLKDDSKPLTHGTELDWSTCIESLSLVNVTLCMK 569


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 125 CRHIGHKFQTPG*Y*VEKPNITLPDPGIEPETSE 24
           C   G K++ P     E     LP P  +P+TSE
Sbjct: 816 CSVSGKKYEPPEIIPEEVHESKLPSPSFDPQTSE 849


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 234 MLTPVIPEGLDRGEVANYTTRIAPSLVPSQM 142
           +LTPVI EGL++  VA++   I    +P+Q+
Sbjct: 237 ILTPVIMEGLNK--VASFRKHINKLNIPTQL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,315,806
Number of Sequences: 27780
Number of extensions: 121137
Number of successful extensions: 263
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)