Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J06
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.33 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   7.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   9.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   9.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   9.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    19   9.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 0.33
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 68  WVFLLSIIPEFEICARY 118
           W FLL ++ + E C RY
Sbjct: 461 WEFLLKLLQDREYCPRY 477


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  YDCRSEVSGSIPG 51
           Y+C    +GSIPG
Sbjct: 62  YECEGRSAGSIPG 74


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  YDCRSEVSGSIPG 51
           Y+C    +GSIPG
Sbjct: 62  YECEGRSAGSIPG 74


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 114 DMATGSPPVTSGTELSS 164
           ++ TG+PP T G  + +
Sbjct: 557 ELLTGTPPFTGGDPMKT 573


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = -1

Query: 216  PEGLDRGEVANYTTRIAPSLVPSQM*QGASLSPYRAQISNS 94
            P GL     A Y   IAP+ + S    G      + Q S +
Sbjct: 1262 PAGLKTTGAAVYARVIAPTTITSSQSPGNQQQTIQTQPSRN 1302


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +2

Query: 65  YWVFLLSIIPEFEICARY 118
           +WV   +++P  ++  RY
Sbjct: 180 FWVTPFTVLPLLKVWGRY 197


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 65  ITLPDPGIEPETSERQSYESS 3
           + L DP +  ETS  +  ESS
Sbjct: 396 LELRDPSLFVETSASELVESS 416


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +2

Query: 65  YWVFLLSIIPEFEICARY 118
           +WV   +++P  ++  RY
Sbjct: 180 FWVTPFTVLPLLKVWGRY 197


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 66 YHFTRPGD 43
          YH +RPGD
Sbjct: 58 YHKSRPGD 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,672
Number of Sequences: 438
Number of extensions: 1484
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)