Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J05
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 122 2e-29
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 122 2e-29
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 1.2
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 4.8
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 4.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 4.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 4.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 24 6.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 24 8.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 24 8.3
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 122 bits (294), Expect = 2e-29
Identities = 58/69 (84%), Positives = 64/69 (92%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGL
Sbjct: 25 ESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGL 84
Query: 333 KVREYELRR 359
KV+EYEL++
Sbjct: 85 KVKEYELKK 93
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 122 bits (294), Expect = 2e-29
Identities = 58/69 (84%), Positives = 64/69 (92%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGL
Sbjct: 25 ESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGL 84
Query: 333 KVREYELRR 359
KV+EYEL++
Sbjct: 85 KVKEYELKK 93
>SPAC105.01c |||potassium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 898
Score = 26.6 bits (56), Expect = 1.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 71 SSPFYLFSMQAVVLAPLCRL 12
S P LF +QA+++ LCRL
Sbjct: 27 SDPLLLFIVQAIIIIALCRL 46
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 24.6 bits (51), Expect = 4.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 79 RSLLLLFIFFQCRRWYSRPSA 17
RS+L + +FF C+ W++ S+
Sbjct: 3 RSVLTIILFFSCQFWHAFASS 23
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 288 TVRGAKAEEILERGLKVREYE 350
T+ G KA+ RGL++R YE
Sbjct: 432 TLEGHKAKSRSTRGLRIRSYE 452
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 4.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 297 LEQCNGQQSFHYDEYQKT 244
LE CN ++S H D+ KT
Sbjct: 371 LEDCNTKESIHIDDILKT 388
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 353 QFIFSYFQSSLKDFLSLSTSNSAMD-SNLFIT 261
Q F YFQ+S + L+L N+ + S +FIT
Sbjct: 414 QSFFEYFQASCRHTLNLLDENANYNFSKIFIT 445
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 335 FQSSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVS 231
F+ L L+ STS + S + N RPY++S
Sbjct: 312 FRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTIS 346
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 241 TVYLAFENTGCWPVSCSSTLAARVSLSPDFLRTTDVQAEFSDMK 110
T Y+ G W S L ++ + DF++T V A +D +
Sbjct: 705 TPYIDRHRVGIWGWSFGGYLTLKILENADFIKTGAVVAPVTDWR 748
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 344 FSYFQSSLKDFLSLSTSNSAMDSNLFITTNT 252
F Y +LK FLS+S++ SA+ L N+
Sbjct: 1076 FCYLYLTLKVFLSISSNRSALLYQLLKLANS 1106
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 205 PVSCSSTLAARVSLSPDFLRTTDVQAEFSDMKIPH 101
P S S + S++ +T DV+ E SD +PH
Sbjct: 913 PSSTSPSTLKNPSINSINRQTHDVEKESSDRDVPH 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,358
Number of Sequences: 5004
Number of extensions: 24812
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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