Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J05
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 113 3e-26
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 113 3e-26
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 113 4e-26
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 103 6e-23
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 40 6e-04
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.091
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.16
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618... 29 1.5
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 2.0
11_06_0648 + 25873779-25874279,25874418-25875548 28 2.0
08_02_0286 - 15326876-15328135 28 2.0
05_03_0234 - 10712818-10712907,10714370-10714558,10715678-10716559 28 2.6
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800... 27 4.5
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 113 bits (273), Expect = 3e-26
Identities = 55/69 (79%), Positives = 62/69 (89%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GL
Sbjct: 27 ESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGL 86
Query: 333 KVREYELRR 359
KV+EYEL R
Sbjct: 87 KVKEYELLR 95
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 113 bits (273), Expect = 3e-26
Identities = 55/69 (79%), Positives = 62/69 (89%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GL
Sbjct: 27 ESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGL 86
Query: 333 KVREYELRR 359
KV+EYEL R
Sbjct: 87 KVKEYELLR 95
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 113 bits (272), Expect = 4e-26
Identities = 55/69 (79%), Positives = 62/69 (89%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GL
Sbjct: 53 ESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGL 112
Query: 333 KVREYELRR 359
KV+EYEL R
Sbjct: 113 KVKEYELLR 121
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 103 bits (246), Expect = 6e-23
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +3
Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+SGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GL
Sbjct: 27 ESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGL 86
Query: 333 KV 338
K+
Sbjct: 87 KI 88
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 168 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILER 326
L A K L +TGQ PV +KA+ +V SF IR I + T+RG L+R
Sbjct: 124 LESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDR 176
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 267 EKIAVHCTVRGAKAEEILERGLK 335
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 267 EKIAVHCTVRGAKAEEILERGLK 335
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>02_02_0026 +
6187860-6187940,6188136-6188207,6188302-6188395,
6188480-6188640,6189053-6189123,6189231-6189312,
6189748-6189849,6189972-6190027,6190278-6190312,
6191495-6191579,6191658-6191717,6191819-6191858,
6192415-6192468
Length = 330
Score = 28.7 bits (61), Expect = 1.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -3
Query: 328 PLSRISSALAPRTVQWTAIFSLRRIPKDLTVYLAFENTGCWPVSCSSTLAAR--VSLSPD 155
P++ +++A A Q+ +F + L+ +LA N PVS LAA S+S D
Sbjct: 25 PIAALAAAFAQDQRQYGVVFITHSAHQSLSTHLADCNVRYMPVSSPPVLAAEQLESISCD 84
Query: 154 FLRTTDVQAEFSDMK 110
+++ FS K
Sbjct: 85 SVQSNVEHDSFSQRK 99
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 168 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 186 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 314
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 261 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 359
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>05_03_0234 - 10712818-10712907,10714370-10714558,10715678-10716559
Length = 386
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = -3
Query: 328 PLSRISSALAPRTVQWTAIFSLRRIPKDLTVYLAFENTGCWPVSCSSTLAARVSLSPDFL 149
P S +S APR V W A F+ + D+TVY + G +S ++ +++ + L
Sbjct: 147 PSSLLSPGAAPRRVLWCA-FAAPVLALDVTVYGQWFTEGRTALSMAANPTGHITVVAN-L 204
Query: 148 RTTDVQAEFSDMKIPHNIFRIVFRSLLLLFI 56
T AE + +F + +LF+
Sbjct: 205 VTARAAAELGWREGAVAVFAVAVAHYAVLFV 235
>01_03_0134 +
12879254-12879596,12879689-12879796,12879905-12880000,
12880090-12880182,12880861-12880949,12881313-12881588,
12881656-12881808
Length = 385
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 121 SDMKIPHNIFRIVFRSLLLLFIFFQCRRWYSRPSADY 11
S ++ PH +++F +LLLLF F + + +A Y
Sbjct: 18 SPLQSPHKQQQLIFAALLLLFFFSSLQSLHCYAAAGY 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,493,454
Number of Sequences: 37544
Number of extensions: 155539
Number of successful extensions: 389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -