Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J05
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   129   7e-31
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   128   9e-31
AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical ...    28   1.7  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    26   7.0  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  129 bits (311), Expect = 7e-31
 Identities = 61/70 (87%), Positives = 67/70 (95%)
 Frame = +3

Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
           +SGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GL
Sbjct: 35  ESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGL 94

Query: 333 KVREYELRRD 362
           KV+EYEL ++
Sbjct: 95  KVKEYELYKE 104



 Score = 34.7 bits (76), Expect = 0.020
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 89  SKNVMRNLHIRKLCLNICXSE 151
           ++NVMR L I+KLCLNIC  E
Sbjct: 15  ARNVMRELKIQKLCLNICVGE 35


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  128 bits (310), Expect = 9e-31
 Identities = 61/70 (87%), Positives = 67/70 (95%)
 Frame = +3

Query: 153 KSGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 332
           +SGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GL
Sbjct: 35  ESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGL 94

Query: 333 KVREYELRRD 362
           KV+EYEL ++
Sbjct: 95  KVKEYELFKE 104



 Score = 34.3 bits (75), Expect = 0.027
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 92  KNVMRNLHIRKLCLNICXSE 151
           +NVMR L I+KLCLNIC  E
Sbjct: 16  RNVMRELKIQKLCLNICVGE 35


>AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical
           protein Y57A10A.3 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 199 SCSSTLAA-RVSLSPDFLRTTDVQAEFSDMKIPHNI-FRIVFRSLLLLFIFFQCRRWYSR 26
           SC++T A    + SP FL  + +   F   K+P+ + F ++F  ++++  FF  +  Y +
Sbjct: 185 SCTATSAMLSKTYSPQFLNNSKISHCFFFAKLPNLLYFSVIFSLIIVIAPFFVLQESYEK 244


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 118 DMKIPHNIFRIVFRSLLLLFIFF 50
           DMK PH+  R +  + +++FIF+
Sbjct: 226 DMKKPHHFSRSIIIAFIIIFIFY 248


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 329 SSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVS 231
           SS   FLS +T  S+  SN+ +T+++ + YS S
Sbjct: 163 SSTTTFLSTTTPVSSTTSNISLTSSSTQSYSSS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,337,276
Number of Sequences: 27780
Number of extensions: 139491
Number of successful extensions: 338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)