Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J03
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   109   2e-25
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   108   2e-25
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.2  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   3.9  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   5.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   5.1  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   6.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    24   6.8  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    24   9.0  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    24   9.0  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    24   9.0  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.0  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  109 bits (261), Expect = 2e-25
 Identities = 48/78 (61%), Positives = 66/78 (84%)
 Frame = +1

Query: 28  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 208 AWRHFYWYLTNEGIEYLR 261
            W  FY+ LTNEG+EYLR
Sbjct: 60  NWGWFYYTLTNEGVEYLR 77



 Score = 33.9 bits (74), Expect = 0.008
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +3

Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPART 374
           LHLP E+VPAT KR VR    R    GRP+   R+
Sbjct: 80  LHLPAEVVPATHKRQVRPAAPR---AGRPEPRERS 111


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  108 bits (260), Expect = 2e-25
 Identities = 48/78 (61%), Positives = 65/78 (83%)
 Frame = +1

Query: 28  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 208 AWRHFYWYLTNEGIEYLR 261
            W  FY+ LTNEG+EYLR
Sbjct: 60  NWGWFYYTLTNEGVEYLR 77



 Score = 33.5 bits (73), Expect = 0.011
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPAR 371
           LHLP E+VPAT KR VR    R    GRP+   R
Sbjct: 80  LHLPAEVVPATHKRQVRPTAPR---AGRPEPRER 110


>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 361 ASGLPTAPRRTVSVRTDLFRVAGTISGGKCNGKF 260
           AS +P+ PR  +S   D F+  G  +  K NGKF
Sbjct: 23  ASTVPS-PRSGISNTNDFFKRIGRDTAEKVNGKF 55


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 327 SLYALTSSGLLVQFQEVSATENSK 256
           ++   TSSGL VQ+  VS   NSK
Sbjct: 403 NILMFTSSGLHVQYLRVSEPSNSK 426


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 147 VRDLLEIWMFGCMVVFLSYHDSLLE 73
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 345 LHHDVLSLYALTSSGLLVQFQEVSATENSK 256
           LH+D   LY+ T    +V + ++  TE+S+
Sbjct: 359 LHNDPAPLYSFTRVSGIVTYMKIFETEHSR 388


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 228 PVKMPPCELFLNISS 184
           P  +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 240 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 151
           +C +P++ P C L L +S+      S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 218 CLHANCSLTYPLDLSDCIALI 156
           CLH N SLT+P   S+   ++
Sbjct: 368 CLHLNASLTHPDSKSEASEVV 388


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 64  EYLFKEGVMVAKKDYHAPKHPDLEK 138
           E L   G +VA  DY A  HPD+E+
Sbjct: 99  ERLSALGNIVACNDYVALVHPDIER 123


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 226 WYLT--NEGIEYLRIFRCTYLLKLYQQ 300
           W  T  ++  +YL I RCT  LK Y+Q
Sbjct: 76  WRFTPASDKYDYLLIDRCTVSLKRYRQ 102


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 90  HDSLLEEVLIDRNTVL-FWHQHLGQPTFPS 4
           H  LL+    D + +  F HQH G+P  PS
Sbjct: 259 HIDLLDHHFCDLSEISKFNHQHSGKPDHPS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,090
Number of Sequences: 5004
Number of extensions: 30264
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)