Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J03
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 114 2e-26
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 114 2e-26
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 111 2e-25
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.39
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 30 0.52
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 27 3.6
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133 27 4.8
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 4.8
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 27 6.3
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 6.3
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608 26 8.4
01_06_0739 - 31601656-31602233,31602777-31602906 26 8.4
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 114 bits (274), Expect = 2e-26
Identities = 48/78 (61%), Positives = 66/78 (84%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLR 261
+W+++YWYLTN+GIE+LR
Sbjct: 60 SWQYYYWYLTNDGIEHLR 77
Score = 29.9 bits (64), Expect = 0.68
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVR 320
L+LP EIVPATLK+S R
Sbjct: 80 LNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 114 bits (274), Expect = 2e-26
Identities = 48/78 (61%), Positives = 66/78 (84%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLR 261
+W+++YWYLTN+GIE+LR
Sbjct: 60 SWQYYYWYLTNDGIEHLR 77
Score = 29.9 bits (64), Expect = 0.68
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVR 320
L+LP EIVPATLK+S R
Sbjct: 80 LNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 111 bits (266), Expect = 2e-25
Identities = 47/80 (58%), Positives = 65/80 (81%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLRIF 267
+W+H+YWYLTN+GIE+LR +
Sbjct: 60 SWQHYYWYLTNDGIEHLRSY 79
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPAR 371
L+LP E+VP TLK+S + + G G RP P R
Sbjct: 80 LNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPR 116
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.39
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 367 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCNG 266
A A G P P + VR L+ T GG C G
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRG 36
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 234
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 235 TNEGI 249
N +
Sbjct: 144 PNGSV 148
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 366 LEHQACQLHHDVLSLYALTSSGLLVQFQEVSATENSKVFNTL 241
L+H+ C+L HD L G L + ++ A E+ K+ L
Sbjct: 437 LQHEGCRLQHDDWQLKHCVVQGHLHRLEQQPAQEHLKMLKQL 478
>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
Length = 997
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 293 TSNPEE-VSAYRDSTSWCSWQA-*CSSTN 373
T NP + + ++ DST +CSW+ CSS N
Sbjct: 44 TLNPHQSLISWNDSTHFCSWEGISCSSKN 72
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 46 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 144
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 299 NPEEVSAYRDSTSWCSWQA--*CSST 370
NP+E+S++ +T+ CSW + CS T
Sbjct: 20 NPDELSSWLPATNCCSWDSGIICSDT 45
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 234
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 235 TNEGI 249
N +
Sbjct: 158 PNGSV 162
>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
Length = 276
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 37 PKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 189
P R+S Y+ + + MV DY P DL+ + +L + ++ +K++G
Sbjct: 144 PSAGRISGYDMVMQSWEMVCDADYEFPLQIDLQDVEVHVRGDLGYVTCLELVKTKG 199
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 189
++ P R+S Y+ + + MV DY P + DL+ + +L + ++ +K++G
Sbjct: 146 VIHPAAGRISGYDVVMQSWEMVCGADYEFPLNIDLKNVEVHVHGDLGYVTCLEVVKTKG 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,826
Number of Sequences: 37544
Number of extensions: 195153
Number of successful extensions: 570
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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