Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J03
(375 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10 v... 146 2e-35
U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10 pro... 146 2e-35
BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10 p... 146 2e-35
BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10 p... 146 2e-35
BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein. 146 2e-35
BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10 p... 146 2e-35
BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein. 146 2e-35
BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein. 146 2e-35
BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein. 146 2e-35
BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10 p... 146 2e-35
AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10 p... 133 2e-31
AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein. 103 2e-22
Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein. 101 8e-22
BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein. 95 9e-20
U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow... 31 1.2
M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow... 31 1.2
BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.2
AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal d... 31 1.2
AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens ... 31 1.6
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 29 6.5
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 29 6.5
M36676-1|AAA35548.1| 347|Homo sapiens apolipoprotein B100 protein. 29 6.5
M31030-1|AAA51756.1| 152|Homo sapiens apolipoprotein B 100 prot... 29 6.5
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 29 6.5
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 29 6.5
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 29 6.5
M12413-1|AAA51742.1| 836|Homo sapiens APOB protein. 29 6.5
M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein. 29 6.5
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 29 6.5
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 29 6.5
AC115619-1|AAX93246.1| 633|Homo sapiens unknown protein. 29 6.5
AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B varia... 29 6.5
BC005368-1|AAH05368.1| 505|Homo sapiens zinc finger protein 649... 28 8.6
AK022706-1|BAB14191.1| 505|Homo sapiens protein ( Homo sapiens ... 28 8.6
>AB209165-1|BAD92402.1| 174|Homo sapiens ribosomal protein S10
variant protein.
Length = 174
Score = 146 bits (355), Expect = 2e-35
Identities = 65/81 (80%), Positives = 74/81 (91%), Gaps = 2/81 (2%)
Frame = +1
Query: 25 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVK 198
+MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVK
Sbjct: 9 QMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVK 68
Query: 199 EQFAWRHFYWYLTNEGIEYLR 261
EQFAWRHFYWYLTNEGI+YLR
Sbjct: 69 EQFAWRHFYWYLTNEGIQYLR 89
Score = 34.7 bits (76), Expect = 0.099
Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPA L+RS R ET R G + PAR
Sbjct: 92 LHLPPEIVPAILRRS-RPETGRPRPKGLEGERPAR 125
>U14972-1|AAA85660.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BX255972-3|CAH73101.1| 172|Homo sapiens ribosomal protein S10
protein.
Length = 172
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BX255972-2|CAH73100.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC073799-1|AAH73799.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC071946-1|AAH71946.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC070235-1|AAH70235.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC005012-1|AAH05012.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC001955-1|AAH01955.1| 165|Homo sapiens RPS10 protein protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>BC001032-1|AAH01032.1| 165|Homo sapiens ribosomal protein S10
protein.
Length = 165
Score = 146 bits (354), Expect = 2e-35
Identities = 65/80 (81%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+NR++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 202 QFAWRHFYWYLTNEGIEYLR 261
QFAWRHFYWYLTNEGI+YLR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLR 80
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 LHLPPEIVPATLKRSVRTETVRRGAVG-RPDAPAR 371
LHLPPEIVPATL+RS R ET R G + PAR
Sbjct: 83 LHLPPEIVPATLRRS-RPETGRPRPKGLEGERPAR 116
>AB007151-1|BAA25817.1| 78|Homo sapiens ribosomal protein S10
protein.
Length = 78
Score = 133 bits (321), Expect = 2e-31
Identities = 59/73 (80%), Positives = 66/73 (90%), Gaps = 2/73 (2%)
Frame = +1
Query: 49 RVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKEQFAWRHF 222
R++IYE LFKEGVMVAKKD H PKHP+L + +PNL V+KAMQSLKSRGYVKEQFAWRHF
Sbjct: 1 RIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHF 60
Query: 223 YWYLTNEGIEYLR 261
YWYLTNEGI+YLR
Sbjct: 61 YWYLTNEGIQYLR 73
>AY480047-1|AAR95680.1| 4684|Homo sapiens plectin 6 protein.
Length = 4684
Score = 103 bits (246), Expect = 2e-22
Identities = 48/79 (60%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 204
MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+E
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 205 FAWRHFYWYLTNEGIEYLR 261
FAW HFYWYLTNEGI +LR
Sbjct: 65 FAWCHFYWYLTNEGIAHLR 83
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 270 LHLPPEIVPATLKR 311
LHLPPEIVPA+L+R
Sbjct: 86 LHLPPEIVPASLQR 99
>Z54367-1|CAA91196.1| 4684|Homo sapiens plectin protein.
Length = 4684
Score = 101 bits (242), Expect = 8e-22
Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 204
MLMP+ +IYE LF+EGVMVAKKD HP + + NLQV++AM SL++RG V+E
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 205 FAWRHFYWYLTNEGIEYLR 261
FAW HF+WYLTNEGI +LR
Sbjct: 65 FAWCHFFWYLTNEGIAHLR 83
>BC030568-1|AAH30568.1| 72|Homo sapiens LOC376693 protein protein.
Length = 72
Score = 94.7 bits (225), Expect = 9e-20
Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 2/60 (3%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDL--EKIPNLQVIKAMQSLKSRGYVKE 201
MLMPK+N ++IYE LFKEGVMVAKKD H PKHP+L + PNL+V+KAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNWIAIYELLFKEGVMVAKKDVHMPKHPELADKNAPNLRVMKAMQSLKSRGYVKE 60
>U07149-1|AAA16958.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 168 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 37
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>M73531-1|AAA60260.1| 346|Homo sapiens retinal degeneration slow
protein protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 168 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 37
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>BC074720-1|AAH74720.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 168 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 37
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AL049843-2|CAB75420.1| 346|Homo sapiens peripherin 2 (retinal
degeneration, slow) protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 168 HSFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFW 37
+S+DH + L +W+ GC LSY+ SL+ + + T+L W
Sbjct: 234 YSYDHQT--EELNLWVRGCRAALLSYYSSLMNSMGV--VTLLIW 273
>AK126796-1|BAC86698.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ44846 fis, clone BRACE3051144. ).
Length = 195
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 119 LGAW*SFLATMTPSLKRYS 63
LG W FLAT+TPSLKR S
Sbjct: 177 LGRWTFFLATVTPSLKRSS 195
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4279 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4327
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4282 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4330
>M36676-1|AAA35548.1| 347|Homo sapiens apolipoprotein B100 protein.
Length = 347
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 66 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 114
>M31030-1|AAA51756.1| 152|Homo sapiens apolipoprotein B 100
protein.
Length = 152
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 100 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 148
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4282 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4330
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 2981 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 3029
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4282 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4330
>M12413-1|AAA51742.1| 836|Homo sapiens APOB protein.
Length = 836
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 555 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 603
>M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein.
Length = 1455
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 1174 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 1222
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4282 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4330
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 4282 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 4330
>AC115619-1|AAX93246.1| 633|Homo sapiens unknown protein.
Length = 633
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 352 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 400
>AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B variant
protein.
Length = 1615
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 151 QVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFRCTYLLKLYQ 297
+V KA+QSLK+ ++ F + L + I+ L+ + TYL+ Q
Sbjct: 1334 EVFKAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQ 1382
>BC005368-1|AAH05368.1| 505|Homo sapiens zinc finger protein 649
protein.
Length = 505
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 EGVMVAKKDYHAPKHPDLEKIPN--LQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIE 252
E + + + H+P HP++EK + Q ++ + LK G E Y LTN+
Sbjct: 64 EPLWTLEDEIHSPAHPEIEKADDHLQQPLQNQKILKRTGQRYEHGRTLKSYLGLTNQSRR 123
Query: 253 YLR 261
Y R
Sbjct: 124 YNR 126
>AK022706-1|BAB14191.1| 505|Homo sapiens protein ( Homo sapiens
cDNA FLJ12644 fis, clone NT2RM4001979, weakly similar to
ZINC FINGER PROTEIN 84. ).
Length = 505
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 EGVMVAKKDYHAPKHPDLEKIPN--LQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIE 252
E + + + H+P HP++EK + Q ++ + LK G E Y LTN+
Sbjct: 64 EPLWTLEDEIHSPAHPEIEKADDHLQQPLQNQKILKRTGQRYEHGRTLKSYLGLTNQSRR 123
Query: 253 YLR 261
Y R
Sbjct: 124 YNR 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,336,345
Number of Sequences: 237096
Number of extensions: 1075309
Number of successful extensions: 2269
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2255
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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