Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_J02
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 58 7e-10
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 57 2e-09
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 32 0.056
07_01_0141 + 1045155-1045365,1045457-1045611,1045702-1046092,104... 27 1.6
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 2.1
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 27 2.8
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 26 4.9
02_02_0031 - 6215098-6215231,6215963-6216122,6217225-6217395,621... 26 4.9
10_08_0160 - 15309460-15309634,15309698-15309840 25 6.5
12_02_0207 - 15542329-15542970 25 8.5
09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555 25 8.5
05_04_0361 - 20648383-20649942 25 8.5
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 25 8.5
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 58.4 bits (135), Expect = 7e-10
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 45 MGRMHGPGKGISQSRLPYRRSVPTCVKLTADDINEQIFKLGKKGLTP 185
MGRMH GKGIS S +PY+R+ P+ VK A D+ E I K KKG P
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMP 47
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 56.8 bits (131), Expect = 2e-09
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 45 MGRMHGPGKGISQSRLPYRRSVPTCVKLTADDINEQIFKLGKKGLTP 185
MGRMH GKG+S S LPYRR+ P VK +A ++ E I ++ KKG P
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLP 47
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 32.3 bits (70), Expect = 0.056
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 69 KGISQSRLPYRRSVPTCVKLTADDI 143
KGIS S LPY+R+ P+ +K A D+
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDV 55
>07_01_0141 +
1045155-1045365,1045457-1045611,1045702-1046092,
1046238-1046314,1046447-1046680
Length = 355
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 96 YRRSVPTCVKLTADDINEQIFKLGKKG 176
+RR +P CV+L AD I+ ++ KKG
Sbjct: 57 FRRELPLCVRLLADVIDVMKEEVEKKG 83
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 178 RPFFPSLKICSLISSAVSFTQVGTLRRYGSLDW 80
R F L L + V TLR+YG+LDW
Sbjct: 94 RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 88 LDWDIPLPGPCIRPILAAFYSIAASCR 8
LDW + L GPC R I ++ S+ +
Sbjct: 824 LDWHLLLEGPCNREICCSYASMVEEAK 850
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 66 GKGISQSRLPYRRSVPTCVKLTADDINE 149
GKG+ + LP+ R+VPT + ++ +
Sbjct: 46 GKGVPGASLPFHRAVPTLTHMALVELEK 73
>02_02_0031 -
6215098-6215231,6215963-6216122,6217225-6217395,
6217556-6217746,6218047-6218287
Length = 298
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 94 GSLDWDIPLPGP 59
G L W+IP+PGP
Sbjct: 19 GGLGWNIPIPGP 30
>10_08_0160 - 15309460-15309634,15309698-15309840
Length = 105
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 136 SAVSFTQVGTLRRYGSLDWDIPLPGPCIRPILAAFYSIAAS 14
S V+ + GT D + PLP P P AAF + A+S
Sbjct: 40 STVTLSTPGTATAGEDSDVEAPLPLPPAPPATAAFSAAASS 80
>12_02_0207 - 15542329-15542970
Length = 213
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 18 AAIE*KAANMGRMHGPGKGISQSRLPYRRSVP 113
AA+ K + R+ G G+G +S L Y+R +P
Sbjct: 164 AALPAKRGSYWRIAGRGRGGDKSELFYQRPIP 195
>09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555
Length = 530
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 175 PFFPSLKICSLISSAVSFTQVGTLRRYGSLDWDIP 71
PF +IC IS AV ++ + DW++P
Sbjct: 461 PFGAGRRICPGISFAVPVLEMALVALLHHFDWELP 495
>05_04_0361 - 20648383-20649942
Length = 519
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -1
Query: 175 PFFPSLKICSLISSAVSFTQVGTLRRYGSLDWDIPLPG 62
PF ++C + A++ ++ DW+IP PG
Sbjct: 451 PFGAGRRVCPGMQFALATVELALASLVRLFDWEIPPPG 488
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 175 PFFPSLKICSLIS--SAVSFTQVGTLRRYGSLDWDIPLPGPCIRPILAAFYSIAASCRKL 2
P+ ++IC+L + S +F Q+ LR + + P IR I FY +C+KL
Sbjct: 1036 PYLMCIRICNLATCDSLPAFGQLPNLRHFRMNNM------PSIRRIGKEFYGEEGNCKKL 1089
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,027,882
Number of Sequences: 37544
Number of extensions: 106182
Number of successful extensions: 281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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