Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J02
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...    70   3e-13
AC024847-7|AAF60856.2|  261|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine rece...    25   9.4  
AF036705-3|AAB95171.1|  556|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 28/47 (59%), Positives = 39/47 (82%)
 Frame = +3

Query: 45  MGRMHGPGKGISQSRLPYRRSVPTCVKLTADDINEQIFKLGKKGLTP 185
           MGRMH PGKG+++S +PYRRSVP+  K+TA+++ +QI K+ KKGL P
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRP 47


>AC024847-7|AAF60856.2|  261|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.2 protein.
          Length = 261

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 145 LISSAVSFTQV--GTLRRYGSLDWDIPLPGPCIRPILAAFYSIAASCR 8
           LI   V FT    GT+R + +    +P+PG  + PI+  F + AASCR
Sbjct: 12  LILLLVHFTDAFAGTVRPFFTT---LPVPGRNV-PIMRLFENYAASCR 55


>Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical
           protein B0391.3 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 172 FFPSLKICSLISSAVSFTQVGTLRRYGSLDWDIPL 68
           F  SL  CS   SA+S      + RYG+++ D  L
Sbjct: 66  FSESLTYCSFYGSAMSIFASHFIYRYGAVNTDFKL 100


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 56  ARTWQGYIPVEAAVPPQCP 112
           +RT  G + + +A+PP CP
Sbjct: 110 SRTRDGTVCISSAIPPACP 128


>U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine
           receptor, class v protein6 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 181 VRPFFPSLKICSLISSAVSFTQVGTLRRYGSLDWDIPLPG 62
           V   F +L + S     +S     TL+R   + W IP+ G
Sbjct: 107 VNRLFTALMVSSYDKDNISVWGTKTLQRIAIVQWSIPILG 146


>AF036705-3|AAB95171.1|  556|Caenorhabditis elegans Hypothetical
           protein F37C4.5a protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 175 PFFPSLKICSLISSAVSFTQVGTLRRYGSLDW-DIPLPGPCIRP 47
           PF+  +++ + + + +  T  G +R+Y   DW  +PL     RP
Sbjct: 227 PFY-DIRVTAGVEAEMHVTYFGKVRQYSGEDWKTVPLVLSTARP 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,773,679
Number of Sequences: 27780
Number of extensions: 78961
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)