Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_J02
         (187 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   0.44 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   3.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   4.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   5.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    19   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    18   9.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    18   9.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    18   9.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      18   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    18   9.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 36  AANMGRMHGPGKGISQSRLPYRRSVPTCVKLTA 134
           +A  G   GPG   + + L  RRSV  C   TA
Sbjct: 149 SAPTGSSCGPGAAAAAALLSKRRSVSECSLGTA 181


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 82 WDIPLPGPCI 53
          WD  +P PCI
Sbjct: 31 WDGKMPQPCI 40


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 172 FFPSLKICSLISSAVSFTQVGTLRRYG 92
           F  + + C+++  A S T+  TLR YG
Sbjct: 188 FLKNPRPCNVL--ATSLTEPYTLRNYG 212


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 56  ARTWQGYI 79
           AR WQGY+
Sbjct: 305 ARPWQGYM 312


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 56  ARTWQGYI 79
           AR WQGY+
Sbjct: 305 ARPWQGYM 312


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 20  GDRVKSRQYGSYA 58
           GDR   + YG Y+
Sbjct: 114 GDRASGKHYGVYS 126


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 56  ARTWQGYI 79
           AR WQGY+
Sbjct: 305 ARPWQGYM 312


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 20  GDRVKSRQYGSYA 58
           GDR   + YG Y+
Sbjct: 114 GDRASGKHYGVYS 126


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 80  GYTLARSVHTTHI 42
           GYT     HT HI
Sbjct: 356 GYTPVLDCHTAHI 368


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 80  GYTLARSVHTTHI 42
           GYT     HT HI
Sbjct: 67  GYTPVLDCHTAHI 79


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 80  GYTLARSVHTTHI 42
           GYT     HT HI
Sbjct: 356 GYTPVLDCHTAHI 368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 41   QYGSYARTWQGYIPVEAAVPPQ 106
            +YG      +   P+  A+PPQ
Sbjct: 1096 KYGKLVMIHEENAPLPPALPPQ 1117


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 95  VPPQCP 112
           VPP+CP
Sbjct: 57  VPPRCP 62


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -2

Query: 75 YPCQVRAYDPY 43
          YP  V  Y PY
Sbjct: 17 YPMVVHVYHPY 27


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -2

Query: 75 YPCQVRAYDPY 43
          YP  V  Y PY
Sbjct: 17 YPMVVHVYHPY 27


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 95  VPPQCP 112
           VPP+CP
Sbjct: 57  VPPRCP 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = +2

Query: 98  PPQCP 112
           PPQCP
Sbjct: 565 PPQCP 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,298
Number of Sequences: 438
Number of extensions: 949
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)