Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I24
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 103 4e-23
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 103 6e-23
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 103 6e-23
02_04_0427 - 22809481-22810335 28 2.0
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 2.0
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 2.7
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 3.6
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 4.7
07_03_0662 + 20431448-20432767 27 4.7
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 4.7
04_01_0404 - 5297341-5297970,5298304-5299179 27 4.7
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 4.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 6.2
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 6.2
06_01_1085 - 8886868-8887556,8887629-8888574 27 6.2
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 6.2
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 26 8.2
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 8.2
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 103 bits (247), Expect = 4e-23
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 75 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 255 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
+ IK H + N +L+P + GNVG +FT+GDL +VR++
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREE 104
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 103 bits (246), Expect = 6e-23
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 75 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 255 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
+ IK H + N +L+P + GNVG +FT+GDL +VR++
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREE 104
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 103 bits (246), Expect = 6e-23
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 75 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 254
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 255 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
+ IK H + N +L+P + GNVG +FT+GDL +VR++
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREE 104
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 287 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 201
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 314 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 198
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 21 CLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPK 146
CL L+FL T + R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 96 KSNYFVKIIQLLDEYPKCF 152
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 138 YPKCFI--VGADNVGSQQMQQIRISL 209
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 201 YGSVASVASLHCPHPL 154
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 153 IVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 305
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 228 LMGKNTMMRKAIKDHLETNPALEKLLPHI 314
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 197 PYFIAWSQHCAHGQKHHDEESHQG 268
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 227 AHGQKHHDEESHQGPS*NKSSSRKTASSHQGKC 325
A ++ + G S N +SS KTA S Q KC
Sbjct: 740 AEQEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 177 SLHCPHPL*NILGIRPTVG 121
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 231 MGKNTMMRKAIKDHLETNPALEKLLP 308
+GK T++R A+K+ + +P L L+P
Sbjct: 378 LGKMTLLRAAMKEAMRLHPPLPLLIP 403
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 177 SLHCPHPL*NILGIRPTVG 121
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 177 SLHCPHPL*NILGIRPTVG 121
S+ CP L +++GI+PTVG
Sbjct: 209 SILCPASLNSVVGIKPTVG 227
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 186 SVASLHCPHPL*NILGIRPTVG 121
+ AS+ CP +++GI+PTVG
Sbjct: 204 TTASILCPAAANSVVGIKPTVG 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,138
Number of Sequences: 37544
Number of extensions: 242962
Number of successful extensions: 580
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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