Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I24
(372 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 183 2e-46
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 183 2e-46
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 183 2e-46
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 183 2e-46
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 183 2e-46
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 182 4e-46
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 180 2e-45
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 174 7e-44
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 30 2.1
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 30 2.1
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 30 2.1
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 30 2.1
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 30 2.1
AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3 p... 30 2.1
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 30 2.1
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 30 2.1
L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein. 29 6.3
L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein. 29 6.3
BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1 protein. 29 6.3
BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1 protein. 29 6.3
AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein. 29 6.3
AF152479-1|AAD43740.1| 807|Homo sapiens protocadherin alpha 1 s... 28 8.4
AF152305-1|AAD43699.1| 950|Homo sapiens protocadherin alpha 1 p... 28 8.4
AC005609-13|AAC34325.1| 807|Homo sapiens KIAA0345-like 13 protein. 28 8.4
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 183 bits (445), Expect = 2e-46
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 182 bits (442), Expect = 4e-46
Identities = 81/100 (81%), Positives = 94/100 (94%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMG+NTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGRNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 180 bits (437), Expect = 2e-45
Identities = 82/100 (82%), Positives = 92/100 (92%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG +VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLPHI GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIWGNVGFVFTKEDLTEIRD 100
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 174 bits (424), Expect = 7e-44
Identities = 80/100 (80%), Positives = 93/100 (93%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD 368
MRKAI+ HLE NPALEKLLP ++GNVGFVFT+ DL ++RD
Sbjct: 61 MRKAIRGHLENNPALEKLLP-LRGNVGFVFTKEDLTEIRD 99
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 229 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 277
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3
protein.
Length = 259
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 134 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 182
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 81 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 218
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 171 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 219
>L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 194 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 322
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein.
Length = 484
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 194 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 322
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1 protein.
Length = 484
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 194 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 322
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 194 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 322
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein.
Length = 484
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 194 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 322
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>AF152479-1|AAD43740.1| 807|Homo sapiens protocadherin alpha 1
short form protein protein.
Length = 807
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 183 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 335
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
>AF152305-1|AAD43699.1| 950|Homo sapiens protocadherin alpha 1
protein.
Length = 950
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 183 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 335
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
>AC005609-13|AAC34325.1| 807|Homo sapiens KIAA0345-like 13 protein.
Length = 807
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 183 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 335
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,321,743
Number of Sequences: 237096
Number of extensions: 1364776
Number of successful extensions: 2846
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2845
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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