Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I24
         (372 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   174   4e-44
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   174   4e-44
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   174   4e-44
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   174   4e-44
AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p pro...    44   8e-05
AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA...    44   8e-05
AE014298-2144|AAN09666.2| 1453|Drosophila melanogaster CG9176-PC...    29   2.6  
AE014298-2143|AAF48450.3| 1853|Drosophila melanogaster CG9176-PB...    29   2.6  
AB030577-1|BAA89278.1| 1463|Drosophila melanogaster CNG channel-...    29   2.6  
AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-P...    27   6.0  
AY058707-1|AAL13936.1|  703|Drosophila melanogaster LD43147p pro...    27   7.9  
AF179590-1|AAD53181.1|  735|Drosophila melanogaster ubiquitin-sp...    27   7.9  
AE014297-2332|AAF55402.1| 2112|Drosophila melanogaster CG4090-PA...    27   7.9  
AE014297-768|AAF54254.1|  337|Drosophila melanogaster CG7994-PA ...    27   7.9  
AE014296-3035|AAF49249.1|  735|Drosophila melanogaster CG4166-PA...    27   7.9  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  174 bits (423), Expect = 4e-44
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = +3

Query: 69  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
           MRKAI+ HLE NP LEKLLPHIKGNVGFVFT+GDL +VRDK
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDK 101


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  174 bits (423), Expect = 4e-44
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = +3

Query: 69  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
           MRKAI+ HLE NP LEKLLPHIKGNVGFVFT+GDL +VRDK
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDK 101


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  174 bits (423), Expect = 4e-44
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = +3

Query: 69  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
           MRKAI+ HLE NP LEKLLPHIKGNVGFVFT+GDL +VRDK
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDK 101


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  174 bits (423), Expect = 4e-44
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = +3

Query: 69  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
           MRKAI+ HLE NP LEKLLPHIKGNVGFVFT+GDL +VRDK
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDK 101


>AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p
           protein.
          Length = 256

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 93  WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI--K 266
           WK      I   + +YP  F+    N+ +  ++ +R  L+ +S  + GKN +M+  +   
Sbjct: 22  WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRT 81

Query: 267 DHLETNPALEKLLPHIKGNVGFVFT 341
              E  P L KL   + G VG +FT
Sbjct: 82  KSEEVEPELHKLSKRLTGQVGLLFT 106


>AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA
           protein.
          Length = 256

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 93  WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI--K 266
           WK      I   + +YP  F+    N+ +  ++ +R  L+ +S  + GKN +M+  +   
Sbjct: 22  WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRT 81

Query: 267 DHLETNPALEKLLPHIKGNVGFVFT 341
              E  P L KL   + G VG +FT
Sbjct: 82  KSEEVEPELHKLSKRLTGQVGLLFT 106


>AE014298-2144|AAN09666.2| 1453|Drosophila melanogaster CG9176-PC,
           isoform C protein.
          Length = 1453

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 125 TVGRIPKMFHSGCGQCRLATDATDPYFIAWSQ-HCAHGQKHHDEESHQGPS*NKSSSRK 298
           T+GR  ++    C   + A   +D    A++  H  H Q HH  + HQ  S   S+S+K
Sbjct: 553 TLGR-KRLMEVRCVNKKYAKAQSDKEAAAYAAAHPHHHQSHHQGQVHQSDSSENSASKK 610


>AE014298-2143|AAF48450.3| 1853|Drosophila melanogaster CG9176-PB,
           isoform B protein.
          Length = 1853

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 125 TVGRIPKMFHSGCGQCRLATDATDPYFIAWSQ-HCAHGQKHHDEESHQGPS*NKSSSRK 298
           T+GR  ++    C   + A   +D    A++  H  H Q HH  + HQ  S   S+S+K
Sbjct: 553 TLGR-KRLMEVRCVNKKYAKAQSDKEAAAYAAAHPHHHQSHHQGQVHQSDSSENSASKK 610


>AB030577-1|BAA89278.1| 1463|Drosophila melanogaster CNG
           channel-like protein.
          Length = 1463

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 125 TVGRIPKMFHSGCGQCRLATDATDPYFIAWSQ-HCAHGQKHHDEESHQGPS*NKSSSRK 298
           T+GR  ++    C   + A   +D    A++  H  H Q HH  + HQ  S   S+S+K
Sbjct: 553 TLGR-KRLMEVRCVNKKYAKAQSDKEAAAYAAAHPHHHQSHHQGQVHQSDSSENSASKK 610


>AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-PA
           protein.
          Length = 1025

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 30  LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQL 128
           ++F+RS YFT     R  K TW   +  +  QL
Sbjct: 891 IQFMRSKYFTYGNYSRYPKYTWCKRFRSRAEQL 923


>AY058707-1|AAL13936.1|  703|Drosophila melanogaster LD43147p
           protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 QHCAHGQKHHDEESHQGPS*NKSSSRKTASSH-QGKC 325
           +HC   +  H+ +S+   S + ++S  ++SSH  G+C
Sbjct: 465 RHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQC 501


>AF179590-1|AAD53181.1|  735|Drosophila melanogaster
           ubiquitin-specific protease nonstopprotein.
          Length = 735

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 QHCAHGQKHHDEESHQGPS*NKSSSRKTASSH-QGKC 325
           +HC   +  H+ +S+   S + ++S  ++SSH  G+C
Sbjct: 497 RHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQC 533


>AE014297-2332|AAF55402.1| 2112|Drosophila melanogaster CG4090-PA
           protein.
          Length = 2112

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +2

Query: 257 SHQGPS*NKSSSRKTASSHQG 319
           S+QG S N+SSS +++SS+QG
Sbjct: 565 SNQGSSSNQSSSNQSSSSNQG 585


>AE014297-768|AAF54254.1|  337|Drosophila melanogaster CG7994-PA
           protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 203 FIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGKCWLCLHPWRSC*CA 364
           F+ +  H  H  KH  E  HQ     K   R+T +  Q   W   +PW+S  C+
Sbjct: 218 FVRFGSHYKHKHKHKHEHGHQ----YKQKGRRTHT--QTHTW--SNPWQSGQCS 263


>AE014296-3035|AAF49249.1|  735|Drosophila melanogaster CG4166-PA
           protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 QHCAHGQKHHDEESHQGPS*NKSSSRKTASSH-QGKC 325
           +HC   +  H+ +S+   S + ++S  ++SSH  G+C
Sbjct: 497 RHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQC 533


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,119,761
Number of Sequences: 53049
Number of extensions: 411566
Number of successful extensions: 1778
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 984962268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)