Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I24
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 153 4e-38
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 33 0.049
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 28 2.4
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 28 2.4
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 28 2.4
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 28 2.4
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 28 2.4
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 28 2.4
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 28 2.4
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 28 2.4
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 4.3
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 27 5.7
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 27 5.7
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 26 7.5
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 26 7.5
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 26 7.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 26 7.5
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 26 7.5
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 9.9
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 26 9.9
AF036705-7|AAB95174.1| 324|Caenorhabditis elegans Hypothetical ... 26 9.9
AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter o... 26 9.9
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 153 bits (371), Expect = 4e-38
Identities = 65/101 (64%), Positives = 86/101 (85%)
Frame = +3
Query: 69 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 248
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 249 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDK 371
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL ++R K
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSK 101
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 33.5 bits (73), Expect = 0.049
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 63 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 242
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 243 TMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFT 341
++ A+ A L K +KG G +FT
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFT 106
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -2
Query: 371 FITHI-NKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NTD 195
F+ HI + IS NIS++ Q I LD P+ + NA+ TQ TD
Sbjct: 258 FLMHIPSTISMCAAFTNISIEFISQILSCTISLYPALDPLPNFFIIKSYRNAI-TQYLTD 316
Query: 194 LLHLL 180
L LL
Sbjct: 317 FLRLL 321
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 254 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 289
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 319
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 227 AHGQKHHDEESHQGPS*NKSSSRKTASS 310
+HG+KHH + + S + SSS ++SS
Sbjct: 329 SHGKKHHKKAASSSSSSSSSSSSSSSSS 356
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 147 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 302
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 147 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 302
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 30 LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL 209
++ +RS Y S R D +W Y +K+ ++ + + + N ++++++R +L
Sbjct: 281 IREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTL 335
Query: 210 ---RGHSIVLMGKNTMMRKAIKD 269
RG L G+N ++ K I+D
Sbjct: 336 GDMRGKMADLEGRNLLLEKQIED 358
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 183 QMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 305
+M RI RG S+ G+N ++ ++ H NP ++KLL
Sbjct: 240 EMDLQRIMERG-SLKHRGQNQKFKQMLEKHASRNPEVKKLL 279
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 227 AHGQ-KHHDEESHQGPS*NKSSSRKTASSHQG 319
AH + +HH+ H GP N + R +H G
Sbjct: 63 AHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDG 94
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 227 AHGQ-KHHDEESHQGPS*NKSSSRKTASSHQG 319
AH + +HH+ H GP N + R +H G
Sbjct: 907 AHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDG 938
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 26.2 bits (55), Expect = 7.5
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 30 LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL 209
++ +RS Y S R D +W Y +K+ ++ + + + N ++++++R +L
Sbjct: 264 IREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTL 318
Query: 210 ---RGHSIVLMGKNTMMRKAIKD 269
RG L G+N ++ K I+D
Sbjct: 319 GDMRGKMADLEGRNLLLEKQIED 341
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQ 265
QH H Q+HHD HQ
Sbjct: 1688 QHPQHMQQHHDHHPHQ 1703
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQ 265
QH H Q+HHD HQ
Sbjct: 1688 QHPQHMQQHHDHHPHQ 1703
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 218 QHCAHGQKHHDEESHQ 265
QH H Q+HHD HQ
Sbjct: 318 QHPQHMQQHHDHHPHQ 333
>AF036705-7|AAB95174.1| 324|Caenorhabditis elegans Hypothetical
protein F37C4.8 protein.
Length = 324
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 297 FRELDLFQDGP*WLSSSWCFCP*AQC 220
F+ L+LF + W S C CP A C
Sbjct: 44 FQNLELFVEWSNWSCCSACCCPKAVC 69
>AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter of
sr proteins protein1 protein.
Length = 949
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 119 HPTVGRIPKMFHSGCG---QCRLATDATDPYFIAWSQHCA-HGQKHHDEES 259
+PT+ I + H GCG Q + T +F + C+ HG HD +S
Sbjct: 15 NPTICAIEHICHRGCGSYAQIFIFHSKTCNFFHFFKFFCSRHGASAHDAQS 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,692,121
Number of Sequences: 27780
Number of extensions: 201340
Number of successful extensions: 566
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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