Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I23
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   1.8  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    24   4.0  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    24   4.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   5.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   5.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    23   7.1  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    23   7.1  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    23   7.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   9.3  

>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 155 NIYKVTYKCFYKSQHLELKSNICTRL 78
           NIYK       K  H E K+N+ TRL
Sbjct: 47  NIYKQIGPTLVKQSHEEAKTNVKTRL 72


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 183 KDAASLPYPTEWALNPTAYQN 245
           KD AS P P  W++N     N
Sbjct: 304 KDPASAPAPNPWSINDVQANN 324


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 CYFINIYIVSIMYASKDAASLPYPTEWA 221
           C+++N+Y + ++Y++  A +  +  E A
Sbjct: 146 CFYLNLYSICVLYSTFVAITKTFTAEGA 173


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 90  MHAITAFGNSNNTNKSEYFNTSSVKIN 10
           + AIT+    N +N S+ FNT   ++N
Sbjct: 676 LRAITSLLPKNTSNLSDEFNTKLYRLN 702


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 177 ASKDAASLPYPTEWALNPTAYQNVDSS 257
           +S ++ +   PT +  N T YQN+ +S
Sbjct: 372 SSSNSTNSSIPTTYPSNSTTYQNITTS 398


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 47  LFVLLLLPKAVIACIC*ISILSVVTYKNICMLLYK 151
           LF+ + L   ++  IC +S++ ++ Y     +L K
Sbjct: 24  LFIFIALAAVIVLLICLLSVILLLRYTRHGRILLK 58


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 207 PTEWALNPTAYQNVDSSQV 263
           PT+W LN T Y  ++  ++
Sbjct: 84  PTDWVLNDTCYSFLEVERI 102


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 188 ILTRIHYAYNINIYKVTYKC 129
           +LT I  A+++N YKV   C
Sbjct: 63  VLTLIKLAFSLNSYKVILDC 82


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 165 SIMYASKDAAS--LPYPTEWALNPTAYQNVDSSQVDWA 272
           SI ++   AAS    +P  WA   T+  +  SS   WA
Sbjct: 390 SIEFSESGAASPQAGHPPPWAAASTSVSSSTSSPAPWA 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,531
Number of Sequences: 5004
Number of extensions: 21536
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)