Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I23
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518     25   8.0  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    25   8.0  

>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
          Length = 783

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 146 YKYLY-CKHNVCE*GCGKFTVSHRVGLKSDG 235
           YK LY C+H +C+   G +     VG + DG
Sbjct: 345 YKELYPCRHGMCQNIPGNYLCKCGVGKRPDG 375


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 158 INIYKVTYKCFYKSQHLELKSNIC 87
           +N+  +   CFYK   LEL   IC
Sbjct: 706 VNLRYLELGCFYKGPRLELPEAIC 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,152,898
Number of Sequences: 37544
Number of extensions: 125882
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)