Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I23
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    26   5.4  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical
           protein C55A6.10 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 267 NLPD*NLHFGMPSDLRPTLWDTVNLPHP 184
           +LP  N+HF +PS L PT++  +    P
Sbjct: 493 SLPHYNVHFVLPSGLSPTIYTAITNMFP 520


>Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical
           protein H12D21.10 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 164 YNINIYKVTYKCFYKSQHLELK 99
           YN + Y VT+K F K+Q  ELK
Sbjct: 261 YNDHYYGVTWKAFSKNQPFELK 282


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +3

Query: 159 IVSIMYASKDAASLPYPTEWALNPTAYQNVDSSQVDW 269
           ++S ++A  ++ +LP+ T  ALN T+Y  ++++ V W
Sbjct: 769 LISDVFALANSGALPFET--ALNVTSYLPMETATVPW 803


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 50  FVLLLLPKAVIACIC*ISILSVVTYKNICMLLYKYLYCKHNVCE*GC 190
           ++L  L      CI  I ++SV TYK    L   Y+Y     C  GC
Sbjct: 6   YILFSLMMFTALCISLILMISVYTYKRKDQLPVVYIYLM-IACSIGC 51


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 81  ITAFGNSNNTNKSEYFNTSSVKINP 7
           IT  GN++ T+K+  F TS   I+P
Sbjct: 468 ITPIGNNDETDKTLKFETSPKNIDP 492


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 81  ITAFGNSNNTNKSEYFNTSSVKINP 7
           IT  GN++ T+K+  F TS   I+P
Sbjct: 468 ITPIGNNDETDKTLKFETSPKNIDP 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,384,349
Number of Sequences: 27780
Number of extensions: 119959
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)