Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I22
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   110   7e-26
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   110   7e-26
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   6.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   6.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  110 bits (264), Expect = 7e-26
 Identities = 51/76 (67%), Positives = 58/76 (76%)
 Frame = -1

Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
           F  YG V NDFVM+ G   GP KRV+TLRKSL  HT R ALE ++ K+IDTASKFGHGRF
Sbjct: 311 FVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRF 370

Query: 179 QTPADKAAFMGTLKKD 132
           QTPA+   F+GTLKKD
Sbjct: 371 QTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  110 bits (264), Expect = 7e-26
 Identities = 51/76 (67%), Positives = 58/76 (76%)
 Frame = -1

Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
           F  YG V NDFVM+ G   GP KRV+TLRKSL  HT R ALE ++ K+IDTASKFGHGRF
Sbjct: 311 FVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRF 370

Query: 179 QTPADKAAFMGTLKKD 132
           QTPA+   F+GTLKKD
Sbjct: 371 QTPAEAKQFLGTLKKD 386


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 292 FLGPMQQPLIITKSLFTSP 348
           FL   Q+PLIITK  +++P
Sbjct: 13  FLKNPQKPLIITKRFYSTP 31


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 173  ASGSDHAQIWKPY 211
            ASGS HA IW P+
Sbjct: 1603 ASGSPHAFIWNPH 1615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,997
Number of Sequences: 5004
Number of extensions: 19824
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)