Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_I22
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   112   9e-26
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   105   1e-23
07_03_0469 - 18487372-18487698                                         28   1.9  
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989...    27   4.4  
07_03_0467 - 18479199-18479543,18481145-18481417                       27   5.9  
02_05_0334 + 28013726-28013880,28014430-28014528,28014875-280152...    27   5.9  
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    26   7.7  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  112 bits (269), Expect = 9e-26
 Identities = 50/74 (67%), Positives = 58/74 (78%)
 Frame = -1

Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
           FPHYG V  D++MIKGCC+GPKKRV+TLR+SL   T R ALE+I  KFIDT+SKFGHGRF
Sbjct: 315 FPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRF 374

Query: 179 QTPADKAAFMGTLK 138
           QT  +K  F G LK
Sbjct: 375 QTTDEKQRFFGKLK 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  105 bits (251), Expect = 1e-23
 Identities = 46/66 (69%), Positives = 54/66 (81%)
 Frame = -1

Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
           FPHYG V  D++MIKGCC+GPKKRV+TLR+SL   T R ALE+I  KFIDT+SKFGHGRF
Sbjct: 315 FPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRF 374

Query: 179 QTPADK 162
           QT  +K
Sbjct: 375 QTTDEK 380


>07_03_0469 - 18487372-18487698
          Length = 108

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118 SSRIRSFLSVPINAALS---AGVWKRPCPNLEAVSMNFELI 231
           SSR+ S   VP  AA     A  WK+  PN+EA +    L+
Sbjct: 23  SSRVLSTAEVPAEAATDSAFAEAWKKVAPNIEAPATPMSLM 63


>03_05_0376 -
           23598026-23598136,23598395-23598484,23598870-23598935,
           23599743-23599811,23599890-23599998,23600135-23600232,
           23600339-23600420,23601163-23601242,23601346-23601516,
           23601671-23601735,23601842-23601986,23602072-23602245,
           23602498-23602572,23602831-23602959,23603295-23603432,
           23603509-23603610,23604008-23604112,23604282-23604399,
           23605752-23605909,23606159-23606261,23606515-23606582,
           23606940-23607016,23608635-23608806
          Length = 834

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 260 VHTKRAALEKINSKFIDTASKFGHGRFQTPAD 165
           V  KRA LEK+ + F+  AS+F    F +  D
Sbjct: 348 VREKRAELEKLKTTFVRRASEFLRNYFSSLVD 379


>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 118 SSRIRSFLSVPINAALS---AGVWKRPCPNLEAVSMNFELI 231
           SSR  S   VP  AA     A  WK+  PN+EA +    L+
Sbjct: 21  SSRALSTAEVPAEAATDSAFAEAWKKVAPNIEAPATPMSLM 61


>02_05_0334 +
           28013726-28013880,28014430-28014528,28014875-28015250,
           28015558-28015692,28016466-28016612,28016713-28016817
          Length = 338

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 148 PINAALSAGVWKRPCPNLEAVSMNFELIFSNAALLVC 258
           P    +SA ++  PCP+    ++   L FS AAL VC
Sbjct: 5   PSARRVSAVLYHYPCPDGAFAALAAHLYFSAAALPVC 41


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +3

Query: 96  WNCSSCSFFT---NTILLECTHK 155
           W C SCSF     N + L+C H+
Sbjct: 327 WECPSCSFVNFRRNKVCLKCKHE 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,884,944
Number of Sequences: 37544
Number of extensions: 130257
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)