Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_I22
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 113 5e-26
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 113 5e-26
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 113 5e-26
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 113 5e-26
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 113 5e-26
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 113 5e-26
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 113 5e-26
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 113 5e-26
AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical ... 29 0.74
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 26 9.1
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 317 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 376
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 377 QTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 317 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 376
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 377 QTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 219 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 278
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 279 QTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 269 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 328
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 329 QTTAEKRAFMGKLKRDFLAE 348
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 317 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 376
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 377 QTTAEKRAFMGKLKRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 219 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 278
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 279 QTTAEKRAFMGKLKRDFLAE 298
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 269 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 328
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 329 QTTAEKRAFMGKLKRDFLAE 348
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 113 bits (271), Expect = 5e-26
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -1
Query: 359 FPHYGEVNNDFVMIKGCCMGPKKRVITLRKSLRVHTKRAALEKINSKFIDTASKFGHGRF 180
FP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKIN K+IDT+SK GHGRF
Sbjct: 317 FPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRF 376
Query: 179 QTPADKAAFMGTLKKDRIRE 120
QT A+K AFMG LK+D + E
Sbjct: 377 QTTAEKRAFMGKLKRDFLAE 396
>AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical
protein F12E12.10 protein.
Length = 319
Score = 29.5 bits (63), Expect = 0.74
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 282 DDTFLRSHATALDHHKVIVYF 344
DD FLR H + +HKVI+ F
Sbjct: 135 DDRFLRDHLSGFSYHKVIIDF 155
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/41 (26%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 175 VWKRPCPNLEAVSMNFELIFSN-AALLVCTRRDFLKVMTRF 294
+++RP +A+ ++FE++ SN LL+ +++ F K+++++
Sbjct: 1964 IFRRPMRPWDALEVSFEILMSNHETLLIFSQQRFSKLVSQY 2004
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/41 (26%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 175 VWKRPCPNLEAVSMNFELIFSN-AALLVCTRRDFLKVMTRF 294
+++RP +A+ ++FE++ SN LL+ +++ F K+++++
Sbjct: 1964 IFRRPMRPWDALEVSFEILMSNHETLLIFSQQRFSKLVSQY 2004
>Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical
protein T27E9.9 protein.
Length = 408
Score = 26.6 bits (56), Expect = 5.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 84 CRCSWNCSSCSFFT 125
CRCSW C +C +T
Sbjct: 359 CRCSWLCMNCKDWT 372
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 121 SRIRSFLSVPINAALSAGVWKRPCPN 198
SR R F S PIN++ + P PN
Sbjct: 201 SRRRQFFSAPINSSARRNKSRHPAPN 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,613,499
Number of Sequences: 27780
Number of extensions: 112233
Number of successful extensions: 325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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